Package: zoidtmb 1.3.0

Eric J. Ward

zoidtmb: Zero-and-One Inflated Dirichlet Regression Modelling in TMB

Fits Dirichlet regression and zero-and-one inflated Dirichlet regression with Bayesian methods implemented in Stan. These models are sometimes referred to as trinomial mixture models; covariates and overdispersion can optionally be included.

Authors:Eric J. Ward [aut, cre], Alexander J. Jensen [aut], Ryan P. Kelly [aut], Andrew O. Shelton [aut], William H. Satterthwaite [aut], Eric C. Anderson [aut]

zoidtmb_1.3.0.tar.gz
zoidtmb_1.3.0.zip(r-4.7)zoidtmb_1.3.0.zip(r-4.6)zoidtmb_1.3.0.zip(r-4.5)
zoidtmb_1.3.0.tgz(r-4.6-x86_64)zoidtmb_1.3.0.tgz(r-4.6-arm64)zoidtmb_1.3.0.tgz(r-4.5-x86_64)zoidtmb_1.3.0.tgz(r-4.5-arm64)
zoidtmb_1.3.0.tar.gz(r-4.7-arm64)zoidtmb_1.3.0.tar.gz(r-4.7-x86_64)zoidtmb_1.3.0.tar.gz(r-4.6-arm64)zoidtmb_1.3.0.tar.gz(r-4.6-x86_64)
zoidtmb_1.3.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html
DESCRIPTION
card.svg |card.png
zoidtmb/json (API)

# Install 'zoidtmb' in R:
install.packages('zoidtmb', repos = c('https://nmfs-opensci.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/nwfsc-cb/zoidtmb/issues

Uses libs:
  • c++– GNU Standard C++ Library v3
Datasets:
  • chinook - Data from Satterthwaite, W.H., Ciancio, J., Crandall, E., Palmer-Zwahlen, M.L., Grover, A.M., O’Farrell, M.R., Anson, E.C., Mohr, M.S. & Garza, J.C. (2015). Stock composition and ocean spatial distribution from California recreational chinook salmon fisheries using genetic stock identification. Fisheries Research, 170, 166–178. The data genetic data collected from port-based sampling of recreationally-landed Chinook salmon in California from 1998-2002.
  • coddiet - Data from Magnussen, E. 2011. Food and feeding habits of cod (Gadus morhua) on the Faroe Bank. – ICES Journal of Marine Science, 68: 1909–1917. The data here are Table 3 from the paper, with sample proportions (columns w) multiplied by total weight to yield total grams (g) for each sample-diet item combination. Dashes have been replaced with 0s.

On CRAN:

Conda:

nwfsc-cbcpp

1.70 score 1 stars 2 exports 6 dependencies

Last updated from:8a89ca33e2. Checks:11 NOTE, 2 OK. Indexed: no.

TargetResultTimeFilesSyslog
linux-devel-arm64NOTE164
linux-devel-x86_64NOTE152
source / vignettesOK195
linux-release-arm64NOTE154
linux-release-x86_64NOTE158
macos-release-arm64NOTE142
macos-release-x86_64NOTE364
macos-oldrel-arm64NOTE96
macos-oldrel-x86_64NOTE262
windows-develNOTE143
windows-releaseNOTE117
windows-oldrelNOTE158
wasm-releaseOK162

Exports:broken_stickfit_zoidTMB

Dependencies:gtoolslatticeMatrixRcppRcppEigenTMB