manualUpdated 24 days ago

Samantha Schiano

Rendered from manual.Rmd in satf 0.1.0.
Making a spatial grid fileUpdated 1 months ago

Paul Carvalho

Rendered from making_a_spatial_grid.Rmd in FishSET 1.1.0.
Changing demographic ratesUpdated 1 months ago

Eric J. Ward

Rendered from a2demogrates.Rmd in kwdemog 1.0.4.
Scallop ExampleUpdated 2 months ago

Lisa Pfeiffer

Rendered from scallop-example.Rmd in FishSET 1.1.0.
Current SRKW PopulationUpdated 3 months ago

Eric J. Ward

Rendered from a1currentpop.Rmd in kwdemog 1.0.4.
Density dependence in killer whalesUpdated 3 months ago

Eric J. Ward

Rendered from a5densitydependence.Rmd in kwdemog 1.0.4.
Examples of using data and functionsUpdated 3 months ago

Eric J. Ward

Rendered from a0vignette.Rmd in kwdemog 1.0.4.
Future population projectionsUpdated 3 months ago

Eric J. Ward

Rendered from a6projections.Rmd in kwdemog 1.0.4.
Sex ratio at birthUpdated 3 months ago

Eric J. Ward

Rendered from a3srb.Rmd in kwdemog 1.0.4.
Time series of reproductive femalesUpdated 3 months ago

Eric J. Ward

Rendered from a4reprofemales.Rmd in kwdemog 1.0.4.
Create your own likelihood functionUpdated 3 months ago

Paul Carvalho

Rendered from likelihood-template.Rmd in FishSET 1.1.0.
FishSET GUI Quickstart GuideUpdated 7 months ago

Lisa Pfeiffer

Rendered from FishSET_GUI_Quickstart_Guide.Rmd in FishSET 1.1.0.
Overview of mvdlm packageUpdated 9 months ago

Eric J. Ward

Rendered from a01_overview.Rmd in mvdlm 0.1.0.
Scallop Conditional Logit Model ExampleUpdated 10 months ago

Bryce McManus

Rendered from scallop-mod-example.Rmd in FishSET 1.1.0.
FishSET R package functionsUpdated 10 months ago

Lisa Pfeiffer

Rendered from FishSET_FunctionList.Rmd in FishSET 1.1.0.
Extracting estimated and derived parametersUpdated 12 months ago

Eric J. Ward

Rendered from a4_derived.Rmd in phenomix 1.0.4.
Fitting time varying phenology models with the phenomix packageUpdated 12 months ago

Eric J. Ward

Rendered from a1_examples.Rmd in phenomix 1.0.4.
Including covariatesUpdated 12 months ago

Eric J. Ward

Rendered from a2_covariates.Rmd in phenomix 1.0.4.
TroubleshootingUpdated 12 months ago

Eric J. Ward

Rendered from a3_troubleshooting.Rmd in phenomix 1.0.4.
Overview of the bayesdfa packageUpdated 1 years ago

Eric J. Ward, Sean C. Anderson, Mary E. Hunsicker, Mike A. Litzow, Luis A. Damiano, Mark D. Scheuerell, Elizabeth E. Holmes, Nick Tolimieri

Rendered from a1_bayesdfa.Rmd in bayesdfa 1.3.3.
Basic HLI queriesUpdated 1 years ago

Eli Holmes

Rendered from basics.Rmd in rCAX 1.0.3.
Getting StartedUpdated 1 years ago

Eli Holmes

Rendered from setup.Rmd in rCAX 1.0.3.
Fitting models with zoidUpdated 1 years ago

Eric J. Ward

Rendered from a01_fitting.Rmd in zoid 1.3.1.
MAR1 State-Space ModelUpdated 2 years ago

Elizabeth Eli Holmes

Rendered from MAR1-State-Space.Rmd in MAR1 2.3.
Getting_StartedUpdated 2 years ago

Elizabeth Eli Holmes

Rendered from Getting_Started.Rmd in MAR1 2.3.
Speed ComparisonsUpdated 2 years ago

Elizabeth E. Holmes

Rendered from Comparisons.Rmd in marssTMB 0.0.14.
Learning MARSSUpdated 2 years ago

Elizabeth Eli Holmes

Rendered from Learning_MARSS.Rmd in MARSS 3.11.9.
EM_DerivationUpdated 2 years ago

Elizabeth Eli Holmes

Rendered from EMDerivation.Rnw in MARSS 3.11.9.
Quick Start GuideUpdated 2 years ago

Elizabeth Eli Holmes

Rendered from Quick_Start.Rmd in MARSS 3.11.9.
ResidualsUpdated 2 years ago

Elizabeth Eli Holmes

Rendered from Residuals.Rnw in MARSS 3.11.9.
User GuideUpdated 2 years ago

Elizabeth Eli Holmes

Rendered from UserGuide.Rnw in MARSS 3.11.9.
dfaTMB: Dynamic Factor AnalysisUpdated 2 years ago

Eli Holmes

Rendered from dfaTMB.Rmd in marssTMB 0.0.14.
Quick StartUpdated 2 years ago

Elizabeth E. Holmes

Rendered from Quick_Start.Rmd in marssTMB 0.0.14.
Dynamic Factor AnalysisUpdated 2 years ago

Elizabeth E. Holmes

Rendered from MARSS_TMB.Rmd in marssTMB 0.0.14.
Optimization discussionUpdated 2 years ago

Elizabeth E. Holmes

Rendered from Optimization.Rmd in marssTMB 0.0.14.
Combining data with bayesdfaUpdated 2 years ago

Eric J. Ward, Sean C. Anderson, Mary E. Hunsicker, Mike A. Litzow, Luis A. Damiano, Mark D. Scheuerell, Elizabeth E. Holmes, Nick Tolimieri

Rendered from a2_combining_data.Rmd in bayesdfa 1.3.3.
rCAX API query functionUpdated 2 years ago

Eli Holmes

Rendered from api_get.Rmd in rCAX 1.0.3.
Estimating process trend variability with bayesdfaUpdated 2 years ago

Eric J. Ward, Sean C. Anderson, Mary E. Hunsicker, Mike A. Litzow, Luis A. Damiano, Mark D. Scheuerell, Elizabeth E. Holmes, Nick Tolimieri

Rendered from a5_estimate_process_sigma.Rmd in bayesdfa 1.3.3.
Examples of fitting DFA models with lots of dataUpdated 2 years ago

Eric J. Ward, Sean C. Anderson, Mary E. Hunsicker, Mike A. Litzow, Luis A. Damiano, Mark D. Scheuerell, Elizabeth E. Holmes, Nick Tolimieri

Rendered from a7_bigdata.Rmd in bayesdfa 1.3.3.
Examples of fitting smooth trend DFA modelsUpdated 2 years ago

Eric J. Ward, Sean C. Anderson, Mary E. Hunsicker, Mike A. Litzow, Luis A. Damiano, Mark D. Scheuerell, Elizabeth E. Holmes, Nick Tolimieri

Rendered from a4_smooth.Rmd in bayesdfa 1.3.3.
Examples of including covariates with bayesdfaUpdated 2 years ago

Eric J. Ward, Sean C. Anderson, Mary E. Hunsicker, Mike A. Litzow, Luis A. Damiano, Mark D. Scheuerell, Elizabeth E. Holmes, Nick Tolimieri

Rendered from a3_covariates.Rmd in bayesdfa 1.3.3.
Fitting compositional dynamic factor models with bayesdfaUpdated 2 years ago

Eric J. Ward, Sean C. Anderson, Mary E. Hunsicker, Mike A. Litzow, Luis A. Damiano, Mark D. Scheuerell, Elizabeth E. Holmes, Nick Tolimieri

Rendered from a6_compositional.Rmd in bayesdfa 1.3.3.
Using CAX HLI dataUpdated 2 years ago

Eli Holmes

Rendered from cax.Rmd in rCAX 1.0.3.
CAX DatasetsUpdated 2 years ago

Eli Holmes

Rendered from CAX_Tables.Rmd in rCAX 1.0.3.
CAX Data Terms of UseUpdated 2 years ago

Eli Holmes

Rendered from terms.Rmd in rCAX 1.0.3.
Examples using the varlasso packageUpdated 2 years ago

Eric Ward

Rendered from a1_examples.Rmd in varlasso 0.0.1.
Hood-Canal-HCchum2020Updated 3 years ago

Elizabeth Holmes - NOAA Federal

Rendered from Hood-Canal-HCchum2020.Rmd in VRData 2.3.
Ozette-Lake-Sockeye-Salmon-ESU-OzetteSockeye2020Updated 3 years ago

Elizabeth Holmes - NOAA Federal

Rendered from Ozette-Lake-Sockeye-Salmon-ESU-OzetteSockeye2020.Rmd in VRData 2.3.
Puget-Sound-PSchinook2020Updated 3 years ago

Elizabeth Holmes - NOAA Federal

Rendered from Puget-Sound-PSchinook2020.Rmd in VRData 2.3.
Salmon-Chinook-Lower-Columbia-River-ESU-LCchinook2020Updated 3 years ago

Elizabeth Holmes - NOAA Federal

Rendered from Salmon-Chinook-Lower-Columbia-River-ESU-LCchinook2020.Rmd in VRData 2.3.
Salmon-Chinook-Snake-River-fall-run-ESU-ICSRFchinook2021Updated 3 years ago

Elizabeth Holmes - NOAA Federal

Rendered from Salmon-Chinook-Snake-River-fall-run-ESU-ICSRFchinook2021.Rmd in VRData 2.3.
Salmon-Chinook-Snake-River-spring-summer-run-ESU-ICSRSSchinookModelUpdated 3 years ago

Elizabeth Holmes - NOAA Federal

Rendered from Salmon-Chinook-Snake-River-spring-summer-run-ESU-ICSRSSchinookModel.Rmd in VRData 2.3.
Salmon-Chinook-Snake-River-spring-summer-run-ESU-ICSRSSchinookSurvey2020Updated 3 years ago

Elizabeth Holmes - NOAA Federal

Rendered from Salmon-Chinook-Snake-River-spring-summer-run-ESU-ICSRSSchinookSurvey2020.Rmd in VRData 2.3.
Salmon-Chinook-Snake-River-spring-summer-run-ESU-ICSRSSchinookSurveySBT2020Updated 3 years ago

Elizabeth Holmes - NOAA Federal

Rendered from Salmon-Chinook-Snake-River-spring-summer-run-ESU-ICSRSSchinookSurveySBT2020.Rmd in VRData 2.3.
Salmon-Chinook-Upper-Columbia-River-spring-run-ESU-ICUCchinook2020Updated 3 years ago

Elizabeth Holmes - NOAA Federal

Rendered from Salmon-Chinook-Upper-Columbia-River-spring-run-ESU-ICUCchinook2020.Rmd in VRData 2.3.
Salmon-Chinook-Upper-Willamette-River-ESU-UWchinook2020Updated 3 years ago

Elizabeth Holmes - NOAA Federal

Rendered from Salmon-Chinook-Upper-Willamette-River-ESU-UWchinook2020.Rmd in VRData 2.3.
Salmon-chum-Columbia-River-ESU-CRchum2020Updated 3 years ago

Elizabeth Holmes - NOAA Federal

Rendered from Salmon-chum-Columbia-River-ESU-CRchum2020.Rmd in VRData 2.3.
Salmon-coho-Lower-Columbia-River-ESU-LCcoho2020Updated 3 years ago

Elizabeth Holmes - NOAA Federal

Rendered from Salmon-coho-Lower-Columbia-River-ESU-LCcoho2020.Rmd in VRData 2.3.
Salmon-coho-Oregon-Coast-ESU-OCcoho2020Updated 3 years ago

Elizabeth Holmes - NOAA Federal

Rendered from Salmon-coho-Oregon-Coast-ESU-OCcoho2020.Rmd in VRData 2.3.
Steelhead-Lower-Columbia-River-DPS-LCsthd2020Updated 3 years ago

Elizabeth Holmes - NOAA Federal

Rendered from Steelhead-Lower-Columbia-River-DPS-LCsthd2020.Rmd in VRData 2.3.
Steelhead-Middle-Columbia-River-DPS-ICMC2021Updated 3 years ago

Elizabeth Holmes - NOAA Federal

Rendered from Steelhead-Middle-Columbia-River-DPS-ICMC2021.Rmd in VRData 2.3.
Steelhead-Puget-Sound-DPS-PSsteelhead2020Updated 3 years ago

Elizabeth Holmes - NOAA Federal

Rendered from Steelhead-Puget-Sound-DPS-PSsteelhead2020.Rmd in VRData 2.3.
Steelhead-Snake-River-Basin-DPS-ICSRsthdGSIUpdated 3 years ago

Elizabeth Holmes - NOAA Federal

Rendered from Steelhead-Snake-River-Basin-DPS-ICSRsthdGSI.Rmd in VRData 2.3.
Steelhead-Snake-River-Basin-DPS-ICSRsthdModelUpdated 3 years ago

Elizabeth Holmes - NOAA Federal

Rendered from Steelhead-Snake-River-Basin-DPS-ICSRsthdModel.Rmd in VRData 2.3.
Steelhead-Snake-River-Basin-DPS-ICSRsthdSurveyUpdated 3 years ago

Elizabeth Holmes - NOAA Federal

Rendered from Steelhead-Snake-River-Basin-DPS-ICSRsthdSurvey.Rmd in VRData 2.3.
Steelhead-Upper-Columbia-River-DPS-ICUCsthdModelUpdated 3 years ago

Elizabeth Holmes - NOAA Federal

Rendered from Steelhead-Upper-Columbia-River-DPS-ICUCsthdModel.Rmd in VRData 2.3.
Steelhead-Upper-Columbia-River-DPS-ICUCsthdSurvey2020Updated 3 years ago

Elizabeth Holmes - NOAA Federal

Rendered from Steelhead-Upper-Columbia-River-DPS-ICUCsthdSurvey2020.Rmd in VRData 2.3.
Steelhead-Upper-Willamette-River-DPS-UWsthd2020Updated 3 years ago

Elizabeth Holmes - NOAA Federal

Rendered from Steelhead-Upper-Willamette-River-DPS-UWsthd2020.Rmd in VRData 2.3.
Prior sensitivity for overdispersionUpdated 3 years ago

Eric J. Ward

Rendered from a04_priors.Rmd in zoid 1.3.1.
Priors for compositionsUpdated 3 years ago

Eric J. Ward

Rendered from a03_beta_priors.Rmd in zoid 1.3.1.
Simulating dataUpdated 3 years ago

Eric J. Ward

Rendered from a02_simulating.Rmd in zoid 1.3.1.
MethodsUpdated 4 years ago

Elizabeth Holmes - NOAA Federal

Rendered from Methods.Rmd in NWCTrends 1.30.
Example codeUpdated 4 years ago

Elizabeth Holmes - NOAA Federal

Rendered from demo-code.Rmd in NWCTrends 1.30.
demo-dataUpdated 4 years ago

Elizabeth Holmes - NOAA Federal

Rendered from demo-data.Rmd in NWCTrends 1.30.
Introduction to using time varying vector autoregressive models (TVVARSS)Updated 4 years ago

Eric Ward, Mark Scheuerell, Steve Katz

Rendered from intro_tvvarss.Rmd in tvvarss 0.1.1.
VRAPS: VRAP 2nd editionUpdated 7 years ago

Martin Liermann and Eli Holmes

Rendered from Background.Rmd in VRAPS 2.0.