Package: satf 0.1.0
satf: Stock Assessment Tables and Figures
Creates exploratory and finished tables and figures for stock assessment documents from U.S. stock assessment model outputs. This packages addresses parts of the stock assessment workflow that interprets outputs of stock assessment models as well as allows the analyst to create report ready tables and figures, reducing the need to create their own and format then when adding into a report. This package is intended to be used in conjuction with `asar`, a partially automated template for writing various stock assessment reports. Throughout development, we will be creating a set of standardized figures and tables for a stock assessment report, developing functions to produce a variety of diagonostic plots, and other helpful materials. The advantage of using this package over others is that it applies to a range of stock assessment model outputs and standardizes them.
Authors:
satf_0.1.0.tar.gz
satf_0.1.0.zip(r-4.5)satf_0.1.0.zip(r-4.4)satf_0.1.0.zip(r-4.3)
satf_0.1.0.tgz(r-4.5-any)satf_0.1.0.tgz(r-4.4-any)satf_0.1.0.tgz(r-4.3-any)
satf_0.1.0.tar.gz(r-4.5-noble)satf_0.1.0.tar.gz(r-4.4-noble)
satf_0.1.0.tgz(r-4.4-emscripten)satf_0.1.0.tgz(r-4.3-emscripten)
satf.pdf |satf.html✨
satf/json (API)
# Install 'satf' in R: |
install.packages('satf', repos = c('https://nmfs-opensci.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/nmfs-ost/satf/issues
Last updated 2 days agofrom:b25112e878. Checks:1 OK, 7 NOTE. Indexed: no.
Target | Result | Latest binary |
---|---|---|
Doc / Vignettes | OK | Feb 14 2025 |
R-4.5-win | NOTE | Feb 14 2025 |
R-4.5-mac | NOTE | Feb 14 2025 |
R-4.5-linux | NOTE | Feb 14 2025 |
R-4.4-win | NOTE | Feb 14 2025 |
R-4.4-mac | NOTE | Feb 14 2025 |
R-4.3-win | NOTE | Feb 14 2025 |
R-4.3-mac | NOTE | Feb 14 2025 |
Exports:add_themeexp_all_figs_tablesexport_rdaextract_caps_alttextplot_biomassplot_indicesplot_landingsplot_recruitmentplot_recruitment_deviationsplot_spawn_recruitmentplot_spawning_biomasstable_bnctable_indiceswrite_captions
Dependencies:askpassbase64encbigDbitbit64bitopsbslibcachemclicliprcolorspacecommonmarkcpp11crayoncurldata.tabledigestdplyrevaluatefansifarverfastmapflextablefontawesomefontBitstreamVerafontLiberationfontquiverforcatsfsgdtoolsgenericsggplot2gluegridExtragtgtableherehighrhmshtmltoolshtmlwidgetsisobandjquerylibjsonlitejuicyjuicekableExtraknitrlabelinglatticelifecyclemagrittrmarkdownMASSMatrixmemoisemgcvmimemunsellnaniarnlmenmfspalettenormofficeropensslpillarpkgconfigplyrprettyunitsprogresspurrrR6raggrappdirsRColorBrewerRcppreactablereactRreadrrlangrmarkdownrprojrootrstudioapisassscalesstringistringrsvglitesyssystemfontstextshapingtibbletidyrtidyselecttinytextzdbUpSetRutf8uuidV8vctrsviridisviridisLitevisdatvroomwithrxfunxml2yamlzip
Readme and manuals
Help Manual
Help page | Topics |
---|---|
Add NOAA formatting to figure or table | add_theme |
Export all figures and tables | exp_all_figs_tables |
Export a figure or table to rda | export_rda |
Extract captions and alternative texts | extract_caps_alttext |
Plot Total Biomass | plot_biomass |
Plot Index of Abundance | plot_indices |
Plot observed landings by fleet | plot_landings |
Plot Recruitment | plot_recruitment |
Plot Recruitment Deviations | plot_recruitment_deviations |
Plot Spawn-Recruit Curve | plot_spawn_recruitment |
Plot spawning biomass (SB) | plot_spawning_biomass |
Biomass, abundance, and catch time series table | table_bnc |
Create Indices of Abundance Table | table_indices |
Write captions and alternative text | write_captions |