Package: phenomix 1.0.4

Eric J. Ward

phenomix: Fit Density Curves to Peak Timing Data that Varies over Time

The 'phenomix' package fits time-varying density curves to run timing type data commonly encountered in fisheries and ecology. Example applications include to peak run timing curves collected for juvenile or adult Pacific salmon, though could also be applied to other kinds of data such as hydrographs, plant phenology (flowering, leaf out).

Authors:Eric J. Ward [aut, cre], Samantha M. Wilson [ctb], Joseph H. Anderson [ctb]

phenomix_1.0.4.tar.gz
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phenomix.pdf |phenomix.html✨
phenomix/json (API)

# Install 'phenomix' in R:
install.packages('phenomix', repos = c('https://nmfs-opensci.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/nwfsc-cb/phenomix/issues

Pkgdown site:https://nwfsc-cb.github.io

Uses libs:
  • c++– GNU Standard C++ Library v3

On CRAN:

Conda:

cpp

4.53 score 5 stars 34 scripts 11 exports 35 dependencies

Last updated 11 months agofrom:cda03751c7. Checks:1 OK, 11 NOTE. Indexed: no.

TargetResultLatest binary
Doc / VignettesOKMar 26 2025
R-4.5-win-x86_64NOTEMar 26 2025
R-4.5-mac-x86_64NOTEMar 26 2025
R-4.5-mac-aarch64NOTEMar 26 2025
R-4.5-linux-x86_64NOTEMar 26 2025
R-4.4-win-x86_64NOTEMar 26 2025
R-4.4-mac-x86_64NOTEMar 26 2025
R-4.4-mac-aarch64NOTEMar 26 2025
R-4.4-linux-x86_64NOTEMar 26 2025
R-4.3-win-x86_64NOTEMar 26 2025
R-4.3-mac-x86_64NOTEMar 26 2025
R-4.3-mac-aarch64NOTEMar 26 2025

Exports:create_dataextract_allextract_annualextract_lowerextract_meansextract_sigmaextract_thetaextract_upperfitparsplot_diagnostics

Dependencies:clicolorspacedplyrfansifarvergenericsggplot2gluegnormgtableisobandlabelinglatticelifecyclemagrittrMASSMatrixmgcvmunsellnlmepillarpkgconfigR6RColorBrewerRcppRcppEigenrlangscalestibbletidyselectTMButf8vctrsviridisLitewithr

Extracting estimated and derived parameters

Rendered froma4_derived.Rmdusingknitr::rmarkdownon Mar 26 2025.

Last update: 2024-02-26
Started: 2023-05-03

Fitting time varying phenology models with the phenomix package

Rendered froma1_examples.Rmdusingknitr::rmarkdownon Mar 26 2025.

Last update: 2024-02-26
Started: 2022-03-03

Including covariates

Rendered froma2_covariates.Rmdusingknitr::rmarkdownon Mar 26 2025.

Last update: 2024-02-26
Started: 2022-03-03

Troubleshooting

Rendered froma3_troubleshooting.Rmdusingknitr::rmarkdownon Mar 26 2025.

Last update: 2024-02-26
Started: 2022-03-03