Introduction | Model | ER calibration | Reimplementation of VRAP in R | Compared to results from the VRAP package | Faster with Rcpp and C++ | log normal residuals with autocorrelation | Next steps | simFish C++ function
This package is hidden from search results because it is not hosted in the universe of the upstream owner
noaa-nwfsc. To fix this you can add URL: https://nmfs-opensci.r-universe.dev/VRAPS to the package DESCRIPTION file. See also theR-universe documentation.Package: VRAPS 2.0
Elizabeth Holmes - NOAA Federal
VRAPS: VRAP 2nd edition with C++ for RER and Viability Computations
This is a rewrite of the R version of the VRAP program. The original VRAP R package was a one-to-one translation from the original Visual Basic code. VRAPCpp is the same equations, but completely re-written by Martin Liermann to be more efficient. VRAPCpp does not have all the functionality of VRAP. Many of the rav options in VRAP were not used and are removed. There is a shiny that emulates the VRAP 1.0 shiny app.
Authors:
VRAPS_2.0.tar.gz
VRAPS_2.0.zip(r-4.7)VRAPS_2.0.zip(r-4.6)VRAPS_2.0.zip(r-4.5)
VRAPS_2.0.tgz(r-4.6-x86_64)VRAPS_2.0.tgz(r-4.6-arm64)VRAPS_2.0.tgz(r-4.5-x86_64)VRAPS_2.0.tgz(r-4.5-arm64)
VRAPS_2.0.tar.gz(r-4.7-arm64)VRAPS_2.0.tar.gz(r-4.7-x86_64)VRAPS_2.0.tar.gz(r-4.6-arm64)VRAPS_2.0.tar.gz(r-4.6-x86_64)
VRAPS_2.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
VRAPS/json (API)
| # Install 'VRAPS' in R: |
| install.packages('VRAPS', repos = c('https://nmfs-opensci.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/noaa-nwfsc/vrapcpp/issues
cppnwfsc-cbnwfsc-cb-mathbioprotected-speciessalmoncpp
Last updated from:f23512abd4. Checks:12 ERROR, 1 OK. Indexed: no.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-arm64 | ERROR | 144 | ||
| linux-devel-x86_64 | ERROR | 121 | ||
| source / vignettes | ERROR | 176 | ||
| linux-release-arm64 | ERROR | 173 | ||
| linux-release-x86_64 | ERROR | 152 | ||
| macos-release-arm64 | ERROR | 83 | ||
| macos-release-x86_64 | ERROR | 150 | ||
| macos-oldrel-arm64 | ERROR | 87 | ||
| macos-oldrel-x86_64 | ERROR | 190 | ||
| windows-devel | ERROR | 84 | ||
| windows-release | ERROR | 71 | ||
| windows-oldrel | ERROR | 89 | ||
| wasm-release | OK | 154 |
Exports:CompStatsGetInputInputsBackwardCompatMain.VRAP1ReadRapFileReadRavFileRunSims.VRAP1RunSims2CRunSims2RsimFishWriteRapFileWriteRavFile
Dependencies:base64encbslibcachemclicodetoolscommonmarkdigestdoParalleldoSNOWevaluatefastmapfontawesomeforeachfsgluehighrhtmltoolshttpuviteratorsjquerylibjsonliteknitrlaterlifecyclemagrittrmemoisemimeotelpromisesR6rappdirsRcpprlangsassshinyshinyAcesnowsourcetoolsstringistringrvctrsVRAPwithrxfunxtableyaml
Vignettes and/or manual for this package failed to build, some documents may be unavailable. Please inspect thebuild logs for more information.
VRAPS: VRAP 2nd edition
Last update: 2018-01-19
Started: 2018-01-17
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| VRAP with C++ for RER and Viability Computations | VRAPS-package VRAPS |
| CompStats | CompStats |
| GetInput | GetInput |
| Backwards Compatibility for inputs List | InputsBackwardCompat |
| Main sensu VRAP 1.0 but for VRAP 2.0 | Main.VRAP1 |
| Read in rap File | ReadRapFile |
| Read in rav File | ReadRavFile |
| Run simulations sensu VRAP 1.0 | RunSims.VRAP1 |
| Run VRAP 2.0 Simulations in C++ | RunSims2C |
| Run VRAP 2.0 Simulations in native R | RunSims2R |
| Write Rap File from VRAP 2.0 inputs list | WriteRapFile |
| Write Rav File from VRAP 2.0 inputs list | WriteRavFile |
