Package: NWCTrends 1.31

Elizabeth Holmes - NOAA Federal

NWCTrends: Standardized Trend Metrics for Salmonid Populations

This is runs the standardized trends metrics used in the 2016 and 2020 5-year NWFSC Viability Reports for listed PNW salmonids. To run, type library(NWCTrends) and then NWCTrends_report().

Authors:Holmes Elizabeth [aut, cre]

NWCTrends_1.31.tar.gz
NWCTrends_1.31.zip(r-4.7)NWCTrends_1.31.zip(r-4.6)NWCTrends_1.31.zip(r-4.5)
NWCTrends_1.31.tgz(r-4.6-any)NWCTrends_1.31.tgz(r-4.5-any)
NWCTrends_1.31.tar.gz(r-4.7-any)NWCTrends_1.31.tar.gz(r-4.6-any)
NWCTrends_1.31.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
NWCTrends/json (API)

# Install 'NWCTrends' in R:
install.packages('NWCTrends', repos = c('https://nmfs-opensci.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/nwfsc-math-bio/nwctrends/issues

Pkgdown/docs site:https://nwfsc-math-bio.github.io

On CRAN:

Conda:

marssnoaaprotected-speciessalmontime-series

3.48 score 2 stars 7 scripts 1 exports 48 dependencies

Last updated from:9f5ba34900. Checks:7 NOTE, 2 OK. Indexed: no.

TargetResultTimeFilesSyslog
linux-devel-x86_64NOTE125
source / vignettesOK201
linux-release-x86_64NOTE127
macos-release-arm64NOTE78
macos-oldrel-arm64NOTE76
windows-develNOTE92
windows-releaseNOTE73
windows-oldrelNOTE79
wasm-releaseOK115

Exports:NWCTrends_report

Dependencies:base64encbslibcachemcellrangerclicpp11crayondigestevaluatefastmapfontawesomefsgenericsgluehighrhmshtmltoolsjquerylibjsonliteKFASknitrlatticelifecyclemagrittrMARSSmemoisemimemvtnormnlmepillarpkgconfigprettyunitsprogressR6rappdirsreadxlrematchrlangrmarkdownsassstringistringrtibbletinytexutf8vctrsxfunyaml

Methods
Common metrics for ESUs | Dynamic linear modeling for time-varying trend estimation | Multivariate DLMs for analysis of multiple time series from one ESU | Treatment of NAs and 0s | Model selection | Code to fit a multivariate DLM | Wild spawner and fraction wild estimates | Summary statistics
Rendered fromMethods.Rmdusingknitr::rmarkdown

Last update: 2021-08-19
Started: 2021-08-19

Example code
Instructions to run a demo | Instructions to run your own data | Modifying the tables
Rendered fromdemo-code.Rmdusingknitr::rmarkdown

Last update: 2021-07-30
Started: 2021-07-06

demo-data
Notes | Example data file
Rendered fromdemo-data.Rmdusingknitr::rmarkdown

Last update: 2021-07-30
Started: 2021-07-06