.Renviron file in the api-get.Rmd vignette.rcax_hli() and rcax_hli_xport()basics.Rmd, only have API reference for the base API functions, edited the Readme. Added cax.Rmd with more details on the CAX database.rcax_tables() to rcax_datasets() to match pycax packagecax.Rmdhttps://github.com/nwfsc-cb/rCAX/releases/tag/v0.9.0
basics.Rmdrcax_table_query() to be numbers, although the results might be non-intuitive for rcax_hli_xport() since the number will refer to the column order in the table before the columns are sorted into the order found in the downloaded Excel files.https://github.com/nwfsc-cb/rCAX/releases/tag/v0.8.0
_xport functions into one function rcax_hli_xport() with argument hli to specify which HLI.rcax_hli() with argument hli to specify which HLI.basics.Rmd given the changes to the functions.rcax_table_name() to look up the table based on XPort versus base and for a HLI short code.rcax_table_cols() and rcax_table_sortcols() to return these based on XPort versus base and for a HLI short code.cax_column_definitions internal data.https://github.com/nwfsc-cb/rCAX/releases/tag/v0.7.0
rcax_key(). Not needed. Cleaned up some {rredlist} refs.rcax_version() to print the installed versus GitHub version.cax_column_definitions from the definitions tab in the Excel files output by the HLI Tabular Query.type="colnames" now returns a data frame with a name and definition column.https://github.com/nwfsc-cb/rCAX/releases/tag/v0.6.0
rcax_pni_xport(), rcax_rpers_xport(), rcax_juvout_xport(), rcax_presmolt_xport(), rcax_presmolt(), rcax_pni(), rcax_sar(), rcax_rpers(), rcax_presmolt()rcax_table_query() set rownames to NULL in returned tablesggplot2 to Suggests in DESCRIPTION file since I use it in some examples and will use in vignettes.|> dependencyflist names appear in the table. Requires an extra GET call but the call will fail otherwise if cols do not match.https://github.com/nwfsc-math-mbio/rCAX/releases/tag/v0.5.0
rcax_termsofuse() and a Terms of Use vignette. Add more links in Readme to StreamNet data use policies.rcax_nosa_xport() which is the data table available on https://www.streamnet.org/data/hli/ when one downloads a NOSA tablercax_sar_xport() which is the data table available on https://www.streamnet.org/data/hli/ when one downloads a SAR tablercax_table_query() more robust if the cols passed in do not match what is in the table. It will print a warning and only show cols that do appear. Also I added tolower(cols) and tolower(sortcols) so that these are case insensitive.nosa_xport_colnames to sysdata.rda. This is somewhat fragile since StreamNet might change the column names. The code to create the system data is in inst/docs.https://github.com/nwfsc-math-mbio/rCAX/releases/tag/v0.4.0
caxpops The Populations table. I had to download table from StreamNet since the "Populations" table query is throwing an error). Also added caxesu: ESU_DPS names and caxsuperpops: The SuperPopulations table.rcax_table_query() as the base function for all the table query functions. That way I am not repeating the same code for each table.rcax_table_query() documentation about the possible query parameters.rcax_filter() function to allow filtering the tables. Added examples in basics.Rmd.sysdata.rdahttps://github.com/nwfsc-math-mbio/rCAX/releases/tag/v0.2.0
rcax_nosa() and figured out that you can pass in popid as a query parameter. Subset the columns.rcax_tables() to get the table ids that we need for queries.https://github.com/nwfsc-math-mbio/rCAX/releases/tag/v0.1.0