{ "_id": "6a2a9d277b7a29ca60051f3e", "Package": "tvvarss", "Type": "Package", "Title": "Time Varying Vector Autoregressive State Space Models", "Version": "0.1.1", "Authors@R": "as.person(c(\n\"Eric Ward [aut, cre]\",\n\"Mark Scheuerell [aut]\",\n\"Steve Katz [aut]\"\n))", "Maintainer": "Eric Ward ", "Description": "The tvvarss package uses Stan (mc-stan.org) to fit\nmulti-site multivariate autoregressive (aka vector\nautoregressive) state space models with a time varying\ninteraction matrix.", "License": "GPL (>=3)", "Encoding": "UTF-8", "URL": "https://atsa-es.github.io/tvvarss/,\nhttps://github.com/atsa-es/tvvarss", "BugReports": "https://github.com/atsa-es/tvvarss/issues", "Roxygen": "list(markdown = TRUE)", "RoxygenNote": "7.1.1", "SystemRequirements": "GNU make", "Biarch": "true", "VignetteBuilder": "knitr", "Config/pak/sysreqs": "make", "Repository": "https://nmfs-opensci.r-universe.dev", "Date/Publication": "2021-10-04 16:48:14 UTC", "RemoteUrl": "https://github.com/atsa-es/tvvarss", "RemoteRef": "HEAD", "RemoteSha": "31da937bf91afb3ee0b716d785a95bad377eb26c", "NeedsCompilation": "yes", "Packaged": { "Date": "2026-06-11 11:18:21 UTC", "User": "root" }, "Author": "Eric Ward [aut, cre],\nMark Scheuerell [aut],\nSteve Katz [aut]", "MD5sum": "5711ce085376412833ea1ad46d9be74b", "_user": "nmfs-opensci", "_type": "src", "_file": "tvvarss_0.1.1.tar.gz", "_fileid": "914102a0228a5c92d1d4d84e5caf7bacc61702cdc2829abfd02469dbaeac3477", "_filesize": 2822818, "_sha256": "914102a0228a5c92d1d4d84e5caf7bacc61702cdc2829abfd02469dbaeac3477", "_created": "2026-06-11T11:18:21.000Z", "_published": "2026-06-11T11:33:59.855Z", "_distro": "noble", "_jobs": [ { "job": 80784814174, "time": 275, "config": "linux-devel-arm64", "r": "4.7.0", "check": "NOTE", "artifact": "7562726809" }, { "job": 80784814261, "time": 265, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "7562723501" }, { "job": 80784814315, "time": 254, "config": "linux-release-arm64", "r": "4.6.0", "check": "NOTE", "artifact": "7562719612" }, { "job": 80784814171, "time": 264, "config": "linux-release-x86_64", "r": "4.6.0", "check": "NOTE", "artifact": "7562723530" }, { "job": 80784814238, "time": 202, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "NOTE", "artifact": "7562829995" }, { "job": 80784814305, "time": 579, "config": "macos-oldrel-x86_64", "r": "4.5.3", "check": "NOTE", "artifact": "7562921497" }, { "job": 80784814212, "time": 253, "config": "macos-release-arm64", "r": "4.6.0", "check": "NOTE", "artifact": "7562842720" }, { "job": 80784814310, "time": 500, "config": "macos-release-x86_64", "r": "4.6.0", "check": "NOTE", "artifact": "7562898701" }, { "job": 80783786630, "time": 353, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7562632071" }, { "job": 80784814161, "time": 164, "config": "wasm-release", "r": "4.6.0", "check": "FAIL", "artifact": "" }, { "job": 80784814241, "time": 275, "config": "windows-devel", "r": "4.7.0", "check": "NOTE", "artifact": "7562726914" }, { "job": 80784814256, "time": 285, "config": "windows-oldrel", "r": "4.5.3", "check": "NOTE", "artifact": "7562734894" }, { "job": 80784814219, "time": 277, "config": "windows-release", "r": "4.6.0", "check": "NOTE", "artifact": "7562727759" } ], "_buildurl": "https://github.com/r-universe/nmfs-opensci/actions/runs/27342825095", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/atsa-es/tvvarss", "_commit": { "id": "31da937bf91afb3ee0b716d785a95bad377eb26c", "author": "Eric Ward ", "committer": "Eric Ward ", "message": "docs\n", "time": 1633366094 }, "_maintainer": { "name": "Eric Ward", "email": "eric.ward@noaa.gov", "login": "ericward-noaa", "linkedin": "in/eric-ward-42b76b3", "description": "Statistics, fisheries, conservation biology @ Northwest Fisheries Science Center, Seattle WA ", "uuid": 5046884 }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.4.0", "role": "Depends" }, { "package": "BH", "version": ">= 1.66.0", "role": "LinkingTo" }, { "package": "Rcpp", "version": ">= 0.12.0", "role": "LinkingTo" }, { "package": "RcppEigen", "version": ">= 0.3.3.3.0", "role": "LinkingTo" }, { "package": "RcppParallel", "version": ">= 5.0.1", "role": "LinkingTo" }, { "package": "rstan", "version": ">= 2.18.1", "role": "LinkingTo" }, { "package": "StanHeaders", "version": ">= 2.18.0", "role": "LinkingTo" }, { "package": "MASS", "role": "Imports" }, { "package": "methods", "role": "Imports" }, { "package": "Rcpp", "version": ">= 0.12.0", "role": "Imports" }, { "package": "RcppParallel", "version": ">= 5.0.1", "role": "Imports" }, { "package": "rstan", "version": ">= 2.18.1", "role": "Imports" }, { "package": "rstantools", "version": ">= 2.1.1", "role": "Imports" }, { "package": "ggplot2", "role": "Imports" }, { "package": "viridisLite", "role": "Imports" }, { "package": "loo", "version": ">= 2.0.0", "role": "Imports" }, { "package": "rlang", "version": ">= 0.3.1", "role": "Imports" }, { "package": "testthat", "role": "Suggests" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" } ], "_owner": "atsa-es", "_selfowned": false, "_usedby": 0, "_updates": [], "_tags": [], "_topics": [ "bayesian", "multivariate-timeseries", "state-space", "time-series", "cpp" ], "_stars": 12, "_contributors": [ { "user": "ericward-noaa", "count": 95, "uuid": 5046884 }, { "user": "eric-ward", "count": 9, "uuid": 159983626 }, { "user": "eeholmes", "count": 1, "uuid": 2545978 } ], "_userbio": { "uuid": 110112201, "type": "organization", "name": "nmfs-opensci", "description": "GiHub org for NMFS Open Science" }, "_downloads": { "count": 0, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/tvvarss" }, "_devurl": "https://github.com/atsa-es/tvvarss", "_pkgdown": "https://atsa-es.github.io/tvvarss/", "_searchresults": 15, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/readme.html", "extra/readme.md", "extra/tvvarss.html", "manual.pdf" ], "_cranurl": false, "_exports": [ "sim2fit", "simTVVAR", "tvvarss" ], "_help": [ { "page": "tvvarss-package", "title": "Time Varying Vector Autoregressive State Space Models", "topics": [ "tvvarss-package" ] }, { "page": "sim2fit", "title": "Simulate TVVAR model and add observation error", "topics": [ "sim2fit" ] }, { "page": "simTVVAR", "title": "Simulate the process component of a TVVARSS model", "topics": [ "simTVVAR" ] }, { "page": "tvvarss", "title": "Fit a TVVARSS model to multivariate time series data", "topics": [ "tvvarss" ] } ], "_readme": "https://github.com/atsa-es/tvvarss/raw/HEAD/README.md", "_rundeps": [ "abind", "backports", "BH", "callr", "checkmate", "cli", "cpp11", "desc", "distributional", "farver", "generics", "ggplot2", "glue", "gridExtra", "gtable", "inline", "isoband", "labeling", "lifecycle", "loo", "magrittr", "MASS", "matrixStats", "numDeriv", "otel", "pillar", "pkgbuild", "pkgconfig", "posterior", "processx", "ps", "QuickJSR", "R6", "RColorBrewer", "Rcpp", "RcppEigen", "RcppParallel", "rlang", "rstan", "rstantools", "S7", "scales", "StanHeaders", "tensorA", "tibble", "utf8", "vctrs", "viridisLite", "withr" ], "_sysdeps": [ { "shlib": "libstdc++", "package": "libstdc++6", "source": "gcc", "version": "14.2.0-4ubuntu2~24.04.1", "name": "c++", "homepage": "http://gcc.gnu.org/", "description": "GNU Standard C++ Library v3" } ], "_vignettes": [ { "source": "intro_tvvarss.Rmd", "filename": "intro_tvvarss.html", "title": "Introduction to using time varying vector autoregressive models (TVVARSS)", "author": "Eric Ward, Mark Scheuerell, Steve Katz", "engine": "knitr::rmarkdown", "headings": [ "Requirements", "Simulating data", "Ex 1: Linear food chain", "Ex 2: Grazers & plants" ], "created": "2021-02-25 06:21:24", "modified": "2021-02-25 06:21:24", "commits": 1 } ], "_score": 4.2552725051033065, "_indexed": false, "_nocasepkg": "tvvarss", "_universes": [ "nmfs-opensci" ], "_indexurl": "https://atsa-es.r-universe.dev/tvvarss", "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.1.1", "date": "2026-06-11T11:21:59.000Z", "distro": "noble", "arch": "aarch64", "commit": "31da937bf91afb3ee0b716d785a95bad377eb26c", "fileid": "428bc74b77b1b6b7b935855296386170825e656348f2ad33bbe8101a855c09c4", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/nmfs-opensci/actions/runs/27342825095" }, { "r": "4.7.0", "os": "linux", "version": "0.1.1", "date": "2026-06-11T11:22:01.000Z", "distro": "noble", "arch": "x86_64", "commit": "31da937bf91afb3ee0b716d785a95bad377eb26c", "fileid": "fe03d7a265955c54e61952132237db07336a4661932cf949104201f67071da44", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/nmfs-opensci/actions/runs/27342825095" }, { "r": "4.6.0", "os": "linux", "version": "0.1.1", "date": "2026-06-11T11:21:54.000Z", "distro": "noble", "arch": "aarch64", "commit": "31da937bf91afb3ee0b716d785a95bad377eb26c", "fileid": "d8ca7caa4777deb0538b7689bcee8cdd56882cb0f7cb810c8ac42d6b5b4b1177", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/nmfs-opensci/actions/runs/27342825095" }, { "r": "4.6.0", "os": "linux", "version": "0.1.1", "date": "2026-06-11T11:22:04.000Z", "distro": "noble", "arch": "x86_64", "commit": "31da937bf91afb3ee0b716d785a95bad377eb26c", "fileid": "a83e98ccfcf04685eadf06df157f06f5e0a9079648556bd8de430fb631063672", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/nmfs-opensci/actions/runs/27342825095" }, { "r": "4.5.3", "os": "mac", "version": "0.1.1", "date": "2026-06-11T11:27:31.000Z", "arch": "aarch64", "commit": "31da937bf91afb3ee0b716d785a95bad377eb26c", "fileid": "a93800ee57bad68f3be2502df77aa60767c6418a4aef04fae86c345cb459a3ff", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/nmfs-opensci/actions/runs/27342825095" }, { "r": "4.5.3", "os": "mac", "version": "0.1.1", "date": "2026-06-11T11:27:42.000Z", "arch": "x86_64", "commit": "31da937bf91afb3ee0b716d785a95bad377eb26c", "fileid": "43e570af40917b7a01e3cd9620cfb7ae083244f3f7dbe1d02693c662b44689b6", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/nmfs-opensci/actions/runs/27342825095" }, { "r": "4.6.0", "os": "mac", "version": "0.1.1", "date": "2026-06-11T11:27:39.000Z", "arch": "aarch64", "commit": "31da937bf91afb3ee0b716d785a95bad377eb26c", "fileid": "99586b941f85b4d3e54cd2cb2f67bafa42832938c741add66ba696f207b3f724", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/nmfs-opensci/actions/runs/27342825095" }, { "r": "4.6.0", "os": "mac", "version": "0.1.1", "date": "2026-06-11T11:28:21.000Z", "arch": "x86_64", "commit": "31da937bf91afb3ee0b716d785a95bad377eb26c", "fileid": "6a7f265b15017e90b3344e53c2d8f19fa760f291423970ac7ea7404aad773ced", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/nmfs-opensci/actions/runs/27342825095" }, { "r": "4.7.0", "os": "win", "version": "0.1.1", "date": "2026-06-11T11:21:03.000Z", "arch": "x86_64", "commit": "31da937bf91afb3ee0b716d785a95bad377eb26c", "fileid": "6edea41e1113ab7c12e9630aa98a47c00cf6e043f96da0d7eab8019f888dce7d", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/nmfs-opensci/actions/runs/27342825095" }, { "r": "4.5.3", "os": "win", "version": "0.1.1", "date": "2026-06-11T11:22:07.000Z", "arch": "x86_64", "commit": "31da937bf91afb3ee0b716d785a95bad377eb26c", "fileid": "c2e3b49badef9d0b0016c9187784aeb77ddea96f6bf236f8346b5150836b8139", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/nmfs-opensci/actions/runs/27342825095" }, { "r": "4.6.0", "os": "win", "version": "0.1.1", "date": "2026-06-11T11:21:05.000Z", "arch": "x86_64", "commit": "31da937bf91afb3ee0b716d785a95bad377eb26c", "fileid": "ec56ef35a2ffc9226d6ecd9a04ab11ce2a11ef799671e7805e99ce1dedd5e904", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/nmfs-opensci/actions/runs/27342825095" } ] }