{
  "_id": "6ac8bacede46216d5edd6349",
  "Package": "shellfishrisks",
  "Title": "Package for running agent based model exploring genetic risks of\naquaculture production",
  "Version": "0.1.1",
  "Authors@R": "c(\nperson(c(\"Eric\", \"J.\"), \"Ward\", email = \"eric.ward@noaa.gov\",\nrole = c(\"aut\", \"cre\"),comment = c(ORCID = \"0000-0002-4359-0296\")),\nperson(c(\"Dan\"), \"Ovando\", role = \"aut\", email=\"danovan@uw.edu\",\ncomment = c(ORCID = \"0000-0003-2120-7345\")),\nperson(c(\"Natalie\"), \"Lowell\", role = \"aut\", email=\"nclowell@uw.edu\"))",
  "Maintainer": "Eric Ward <eric.ward@noaa.gov>",
  "Description": "This package runs an agent based model in Python,\nexploring the genetic risks of aquaculture production on wild\npopulations.",
  "License": "MIT + file LICENSE",
  "Encoding": "UTF-8",
  "URL": "https://nwfsc-cb.github.io/shellfish-genetic-risks/,https://github.com/nwfsc-cb/shellfish-genetic-risks",
  "BugReports": "https://github.com/nwfsc-cb/shellfish-genetic-risks/issues",
  "RoxygenNote": "7.1.1",
  "VignetteBuilder": "knitr",
  "Roxygen": "list(markdown = TRUE)",
  "Config/pak/sysreqs": "libicu-dev libpng-dev python3 libx11-dev",
  "Repository": "https://nmfs-opensci.r-universe.dev",
  "Date/Publication": "2021-09-14 05:27:37 UTC",
  "RemoteUrl": "https://github.com/nwfsc-cb/shellfish-genetic-risks",
  "RemoteRef": "HEAD",
  "RemoteSha": "ce5064d9277559ee1d005ce47384b67d4a9b0447",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-10-09 09:32:19 UTC",
    "User": "root"
  },
  "Author": "Eric J. Ward [aut, cre] (ORCID:\n<https://orcid.org/0000-0002-4359-0296>),\nDan Ovando [aut] (ORCID: <https://orcid.org/0000-0003-2120-7345>),\nNatalie Lowell [aut]",
  "_user": "nmfs-opensci",
  "_type": "src",
  "_file": "shellfishrisks_0.1.1.tar.gz",
  "_fileid": "https://r2.ropensci.org/ef11c14abe69175157447a281a5b63fadb90edbb3347d990cde79a7d548a8c97",
  "_filesize": 570681,
  "_sha256": "ef11c14abe69175157447a281a5b63fadb90edbb3347d990cde79a7d548a8c97",
  "_expires": "2027-01-17T09:58:36.000Z",
  "_created": "2026-10-09T09:32:19.000Z",
  "_published": "2026-10-09T09:58:37.956Z",
  "_buildurl": "https://github.com/r-universe/nmfs-opensci/actions/runs/37911530405",
  "_status": "failure",
  "_host": "GitHub-Actions",
  "_jobs": [
    {
      "job": 113758934715,
      "time": 138,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "ERROR",
      "artifact": "11606938121"
    },
    {
      "job": 113758934885,
      "time": 126,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "ERROR",
      "artifact": "11606724074"
    },
    {
      "job": 113758934932,
      "time": 75,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "ERROR",
      "artifact": "11609370722"
    },
    {
      "job": 113758934964,
      "time": 104,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "ERROR",
      "artifact": "11609525817"
    },
    {
      "job": 113757688738,
      "time": 208,
      "config": "source",
      "r": "4.6.1",
      "check": "ERROR",
      "artifact": "11606404771"
    },
    {
      "job": 113758934849,
      "time": 100,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "11606318582"
    },
    {
      "job": 113758934968,
      "time": 63,
      "config": "windows-devel-x86_64",
      "r": "4.7.0",
      "check": "ERROR",
      "artifact": "11607142264"
    },
    {
      "job": 113758934793,
      "time": 77,
      "config": "windows-oldrel-x86_64",
      "r": "4.5.3",
      "check": "ERROR",
      "artifact": "11607292000"
    },
    {
      "job": 113758934921,
      "time": 79,
      "config": "windows-release-x86_64",
      "r": "4.6.1",
      "check": "ERROR",
      "artifact": "11607301426"
    }
  ],
  "_upstream": "https://github.com/nwfsc-cb/shellfish-genetic-risks",
  "_commit": {
    "id": "ce5064d9277559ee1d005ce47384b67d4a9b0447",
    "author": "DanOvando <danovan@uw.edu>",
    "committer": "DanOvando <danovan@uw.edu>",
    "message": "typos\n",
    "time": 1631597257
  },
  "_maintainer": {
    "name": "Eric Ward",
    "email": "eric.ward@noaa.gov",
    "login": "ericward-noaa",
    "linkedin": "in/eric-ward-42b76b3",
    "description": "Statistics, fisheries, conservation biology @ Northwest Fisheries Science Center, Seattle WA ",
    "uuid": 5046884,
    "orcid": "0000-0002-4359-0296"
  },
  "_distro": "resolute",
  "_registered": true,
  "_dependencies": [
    {
      "package": "purrr",
      "role": "Imports"
    },
    {
      "package": "dplyr",
      "role": "Imports"
    },
    {
      "package": "ggplot2",
      "role": "Imports"
    },
    {
      "package": "reticulate",
      "role": "Imports"
    },
    {
      "package": "magrittr",
      "role": "Imports"
    },
    {
      "package": "stringr",
      "role": "Imports"
    },
    {
      "package": "tidyr",
      "role": "Imports"
    },
    {
      "package": "readr",
      "version": ">= 2.0.0",
      "role": "Imports"
    },
    {
      "package": "here",
      "role": "Imports"
    },
    {
      "package": "foreach",
      "role": "Imports"
    },
    {
      "package": "doParallel",
      "role": "Imports"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    }
  ],
  "_owner": "nwfsc-cb",
  "_selfowned": false,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_stars": 0,
  "_contributors": [
    {
      "user": "danovando",
      "count": 31,
      "uuid": 8096183
    },
    {
      "user": "ericward-noaa",
      "count": 3,
      "uuid": 5046884
    },
    {
      "user": "nclowell",
      "count": 2,
      "uuid": 22554275
    }
  ],
  "_userbio": {
    "uuid": 110112201,
    "type": "organization",
    "name": "nmfs-opensci",
    "followers": 146,
    "description": "GiHub org for NMFS Open Science"
  },
  "_downloads": {
    "count": 0,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/shellfishrisks"
  },
  "_devurl": "https://github.com/nwfsc-cb/shellfish-genetic-risks",
  "_pkgdown": "https://nwfsc-cb.github.io/shellfish-genetic-risks/",
  "_searchresults": 5,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/manual.pdf",
    "extra/readme.html",
    "extra/readme.md",
    "extra/shellfishrisks.html",
    "LICENSE"
  ],
  "_cranurl": false,
  "_exports": [
    "%>%",
    "generate_ctrl_file",
    "install_pypkgs",
    "load_shellfish",
    "plot_shellfish",
    "run_ctrl_folder",
    "run_shellfishrisk_ctrlfile",
    "serve_shellfish",
    "theme_shellfish"
  ],
  "_help": [
    {
      "page": "generate_ctrl_file",
      "title": "Generate a control file from the default template",
      "topics": [
        "generate_ctrl_file"
      ]
    },
    {
      "page": "install_pypkgs",
      "title": "Install Required Python Packages",
      "topics": [
        "install_pypkgs"
      ]
    },
    {
      "page": "load_shellfish",
      "title": "load shellfish model",
      "topics": [
        "load_shellfish"
      ]
    },
    {
      "page": "plot_shellfish",
      "title": "Plot Shellfish",
      "topics": [
        "plot_shellfish"
      ]
    },
    {
      "page": "run_ctrl_folder",
      "title": "Run all control files in a folder",
      "topics": [
        "run_ctrl_folder"
      ]
    },
    {
      "page": "run_shellfishrisk_ctrlfile",
      "title": "Run shellfishrisk from control file",
      "topics": [
        "run_shellfishrisk_ctrlfile"
      ]
    },
    {
      "page": "serve_shellfish",
      "title": "Load and Serve Shellfish Genetics Results",
      "topics": [
        "serve_shellfish"
      ]
    },
    {
      "page": "theme_shellfish",
      "title": "ggplot2 theme for shellfishrisks",
      "topics": [
        "theme_shellfish"
      ]
    }
  ],
  "_pkglogo": "https://github.com/nwfsc-cb/shellfish-genetic-risks/raw/HEAD/logo.png",
  "_readme": "https://github.com/nwfsc-cb/shellfish-genetic-risks/raw/HEAD/README.md",
  "_rundeps": [
    "bit",
    "bit64",
    "cli",
    "clipr",
    "codetools",
    "cpp11",
    "crayon",
    "doParallel",
    "dplyr",
    "farver",
    "foreach",
    "generics",
    "ggplot2",
    "glue",
    "gtable",
    "here",
    "hms",
    "isoband",
    "iterators",
    "jsonlite",
    "labeling",
    "lattice",
    "lifecycle",
    "magrittr",
    "Matrix",
    "pillar",
    "pkgconfig",
    "png",
    "prettyunits",
    "progress",
    "purrr",
    "R6",
    "rappdirs",
    "RColorBrewer",
    "Rcpp",
    "RcppTOML",
    "readr",
    "reticulate",
    "rlang",
    "rprojroot",
    "S7",
    "scales",
    "stringi",
    "stringr",
    "tibble",
    "tidyr",
    "tidyselect",
    "tzdb",
    "utf8",
    "vctrs",
    "viridisLite",
    "vroom",
    "withr"
  ],
  "_score": 2,
  "_indexed": false,
  "_nocasepkg": "shellfishrisks",
  "_universes": [
    "nmfs-opensci"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.1.1",
      "date": "2026-10-09T09:34:31.000Z",
      "distro": "resolute",
      "commit": "ce5064d9277559ee1d005ce47384b67d4a9b0447",
      "fileid": "https://r2.ropensci.org/f47e65e6d7816621fcb5b4419590f80c4a0a81f5f246d1b5229a7271d65ce6a6",
      "status": "failure",
      "check": "ERROR",
      "buildurl": "https://github.com/r-universe/nmfs-opensci/actions/runs/37911530405"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "0.1.1",
      "date": "2026-10-09T09:34:23.000Z",
      "distro": "resolute",
      "commit": "ce5064d9277559ee1d005ce47384b67d4a9b0447",
      "fileid": "https://r2.ropensci.org/6cb572fdfcf39c6bd321b778a23db933fd261f110985a73d799045d2da7b4ca2",
      "status": "failure",
      "check": "ERROR",
      "buildurl": "https://github.com/r-universe/nmfs-opensci/actions/runs/37911530405"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.1.1",
      "date": "2026-10-09T09:56:51.000Z",
      "commit": "ce5064d9277559ee1d005ce47384b67d4a9b0447",
      "fileid": "https://r2.ropensci.org/c4e4c11caf877618c6da915c49ed3ed61702997ab2063e4dbd301c09ebe0e181",
      "status": "failure",
      "check": "ERROR",
      "buildurl": "https://github.com/r-universe/nmfs-opensci/actions/runs/37911530405"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "0.1.1",
      "date": "2026-10-09T09:57:50.000Z",
      "commit": "ce5064d9277559ee1d005ce47384b67d4a9b0447",
      "fileid": "https://r2.ropensci.org/d8b8bf011d1e749bd064494adbd97bbc144f508dfa8773f4851e062febfdc95e",
      "status": "failure",
      "check": "ERROR",
      "buildurl": "https://github.com/r-universe/nmfs-opensci/actions/runs/37911530405"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.1.1",
      "date": "2026-10-09T09:34:16.000Z",
      "commit": "ce5064d9277559ee1d005ce47384b67d4a9b0447",
      "fileid": "https://r2.ropensci.org/1bee7bc1cc29f7ef7114770fd49f07da276cd5ea47faa0be606b84c8b9f385ef",
      "status": "success",
      "buildurl": "https://github.com/r-universe/nmfs-opensci/actions/runs/37911530405"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.1.1",
      "date": "2026-10-09T09:33:17.000Z",
      "commit": "ce5064d9277559ee1d005ce47384b67d4a9b0447",
      "fileid": "https://r2.ropensci.org/ee3abf525c13bd015ad6659b85aeede8c1a69710bd550a4bd5c6327dfed357ec",
      "status": "failure",
      "check": "ERROR",
      "buildurl": "https://github.com/r-universe/nmfs-opensci/actions/runs/37911530405"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.1.1",
      "date": "2026-10-09T09:33:24.000Z",
      "commit": "ce5064d9277559ee1d005ce47384b67d4a9b0447",
      "fileid": "https://r2.ropensci.org/3b1a5a797a6057945ab62dbb72cadee54d0d121d7fcb8110bfc49b7897661792",
      "status": "failure",
      "check": "ERROR",
      "buildurl": "https://github.com/r-universe/nmfs-opensci/actions/runs/37911530405"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "0.1.1",
      "date": "2026-10-09T09:33:26.000Z",
      "commit": "ce5064d9277559ee1d005ce47384b67d4a9b0447",
      "fileid": "https://r2.ropensci.org/f3fd07ed61767d17ae579faae6a26c5035b30fe1848372c0b8688caa327ea8da",
      "status": "failure",
      "check": "ERROR",
      "buildurl": "https://github.com/r-universe/nmfs-opensci/actions/runs/37911530405"
    }
  ]
}