Package 'VRData' reference manual

Title:	NWFSC PNW Salmonid Viability Reports Data Package
Description:	This R package has the spawner and fraction wild data used to make the common metrics tables and figures used in the PNW Salmonid Viability Reports.
Authors:	Elizabeth Eli Holmes [aut, cre] , Mari Williams [aut], Katie Barnas [aut], Mindy Rowse [aut]
Maintainer:	Elizabeth Holmes - NOAA Federal <[email protected]>
License:	file LICENSE
Version:	2.3
Built:	2024-11-26 20:24:50 UTC
Source:	https://github.com/nwfsc-math-bio/VRData

Hood-Canal-HCchum2020

Description

Spawner and fraction wild data. Species: Summer Chum. Method: . View raw data or Download raw data

Spawner and fraction wild data. Species: Summer Chum.

Strait of Juan de Fuca: Survey. View raw data or Download raw data

Spawner and fraction wild data. Species: Summer Chum.

Strait of Juan de Fuca: . View raw data or Download raw data

Spawner and fraction wild data. Species: Summer Chum.

Hood Canal: Survey. View raw data or Download raw data

Format

A csv file.

SERIES: For certain populations, there are multiple types of spawner count data. For example survey and model counts that are based on different methods. In this case, the 'Series' column gives a name for the dataset to distinguish it from other data sets of the same population.
ESU: ESU or DPS name.
SPECIES: Species name.
METHOD: Method for the spawner count. Survey refers to a spawning ground survey; the count itself is an expansion. See the SPS (database link in sources below) for the details for the data. LadderCount is a weir or dam count. Model refers to the DABOM model that expands from PIT tag data. GSI is an expansion based on the BOXCAR model, which uses GSI to allocate fish sampled at Lower Granite Dam.
MAJOR_POPULATION_GROUP: Major population group within the ESU or DPS.
NMFS_POPID: NWFSC id for the population.
POPULATION_NAME: Long population name.
COMMON_POPULATION_NAME: Shorter population name used in Viability Report figures and tables.
RUN_TIMING: Run timing (fall, winter, spring, etc). If missing, see the ESU/DPS name or may not be applicable for the species.
YEAR: Integer in XXXX format. The year that the count was made. See details for ESU or DPS specific comments.
NUMBER_OF_SPAWNERS: Total spawners or escapement count. -99 means missing count. May be integer or decimal.
FRACWILD: Decimal between 0 and 1. Fraction wild or natural. -99 means missing information.
CONTRIBUTOR: Data contributor. Listed under Source below.
COMPILER: NWFSC staff who compiled the data file: Mari Williams
CITATION: Data citation. Listed under References below.

Source

WDFW, Point No Point Treaty Council

References

Ford, M.J., et al. 2022. Biological Viability Assessment Update for Pacific Salmon and Steelhead Listed Under the Endangered Species Act: Pacific Northwest. U.S. Department of Commerce, NOAA Technical Memorandum NMFS-NWFSC-171. https://doi.org/10.25923/kq2n-ke70

Salmon Population Summaries (SPS) Database: https://www.fisheries.noaa.gov/resource/tool-app/salmon-population-summaries-sps

Original source:

Strait of Juan de Fuca: Hood Canal Summer Chum Natural Origin Spawner Abundance (1971-2019). Spawner abundance data. Point No Point Treaty Council and Washington Department of Fish and Wildlife. Personal Communication with Mindy Rowse, 2020.
Hood Canal: Hood Canal Summer Chum Natural Origin Spawner Abundance (1968-2019). Spawner abundance data. Point No Point Treaty Council and Washington Department of Fish and Wildlife. Personal Communication with Mindy Rowse, 2020.

Examples

data('Hood-Canal-HCchum2020')
library(ggplot2)
out$NUMBER_OF_SPAWNERS[out$NUMBER_OF_SPAWNERS==-99] <- NA
ggplot(out, aes(x=YEAR, y=NUMBER_OF_SPAWNERS)) + 
  geom_point(na.rm = TRUE) +
  ggtitle('Hood-Canal-HCchum2020') +
  facet_wrap(~COMMON_POPULATION_NAME) +
  theme(axis.text.x = element_text(angle = 45, vjust = 1, hjust=1))

out$FRACWILD[out$FRACWILD == -99] <- NA
ggplot(out, aes(x=YEAR, y=FRACWILD)) +
  geom_point(na.rm = TRUE) +
  ggtitle('Fraction Wild') +
  ylim(0,1) +
  facet_wrap(~COMMON_POPULATION_NAME) +
  theme(axis.text.x = element_text(angle = 45, vjust = 1, hjust=1))
data('Hood-Canal-HCchum2020')
library(ggplot2)
out$NUMBER_OF_SPAWNERS[out$NUMBER_OF_SPAWNERS==-99] <- NA
ggplot(out, aes(x=YEAR, y=NUMBER_OF_SPAWNERS)) + 
  geom_point(na.rm = TRUE) +
  ggtitle('Hood-Canal-HCchum2020') +
  facet_wrap(~COMMON_POPULATION_NAME) +
  theme(axis.text.x = element_text(angle = 45, vjust = 1, hjust=1))

out$FRACWILD[out$FRACWILD == -99] <- NA
ggplot(out, aes(x=YEAR, y=FRACWILD)) +
  geom_point(na.rm = TRUE) +
  ggtitle('Fraction Wild') +
  ylim(0,1) +
  facet_wrap(~COMMON_POPULATION_NAME) +
  theme(axis.text.x = element_text(angle = 45, vjust = 1, hjust=1))

Ozette-Lake-Sockeye-Salmon-ESU-OzetteSockeye2020

Description

Spawner and fraction wild data. Species: Sockeye. Method: Survey. View raw data or Download raw data

Format

A csv file.

SERIES: For certain populations, there are multiple types of spawner count data. For example survey and model counts that are based on different methods. In this case, the 'Series' column gives a name for the dataset to distinguish it from other data sets of the same population.
ESU: ESU or DPS name.
SPECIES: Species name.
METHOD: Method for the spawner count. Survey refers to a spawning ground survey; the count itself is an expansion. See the SPS (database link in sources below) for the details for the data. LadderCount is a weir or dam count. Model refers to the DABOM model that expands from PIT tag data. GSI is an expansion based on the BOXCAR model, which uses GSI to allocate fish sampled at Lower Granite Dam.
MAJOR_POPULATION_GROUP: Major population group within the ESU or DPS.
NMFS_POPID: NWFSC id for the population.
POPULATION_NAME: Long population name.
COMMON_POPULATION_NAME: Shorter population name used in Viability Report figures and tables.
RUN_TIMING: Run timing (fall, winter, spring, etc). If missing, see the ESU/DPS name or may not be applicable for the species.
YEAR: Integer in XXXX format. The year that the count was made. See details for ESU or DPS specific comments.
NUMBER_OF_SPAWNERS: Total spawners or escapement count. -99 means missing count. May be integer or decimal.
FRACWILD: Decimal between 0 and 1. Fraction wild or natural. -99 means missing information.
CONTRIBUTOR: Data contributor. Listed under Source below.
COMPILER: NWFSC staff who compiled the data file: Martin Liermann
CITATION: Data citation. Listed under References below.

Source

Makah Fisheries Management, Makah Tribe

References

Salmon Population Summaries (SPS) Database: https://www.fisheries.noaa.gov/resource/tool-app/salmon-population-summaries-sps

Original source: Personal communication with Mike Haggerty, Makah Fisheries Management, Makah Tribe.

Examples

data('Ozette-Lake-Sockeye-Salmon-ESU-OzetteSockeye2020')
library(ggplot2)
out$NUMBER_OF_SPAWNERS[out$NUMBER_OF_SPAWNERS==-99] <- NA
ggplot(out, aes(x=YEAR, y=NUMBER_OF_SPAWNERS)) + 
  geom_point(na.rm = TRUE) +
  ggtitle('Ozette-Lake-Sockeye-Salmon-ESU-OzetteSockeye2020') +
  facet_wrap(~COMMON_POPULATION_NAME) +
  theme(axis.text.x = element_text(angle = 45, vjust = 1, hjust=1))

out$FRACWILD[out$FRACWILD == -99] <- NA
ggplot(out, aes(x=YEAR, y=FRACWILD)) +
  geom_point(na.rm = TRUE) +
  ggtitle('Fraction Wild') +
  ylim(0,1) +
  facet_wrap(~COMMON_POPULATION_NAME) +
  theme(axis.text.x = element_text(angle = 45, vjust = 1, hjust=1))
data('Ozette-Lake-Sockeye-Salmon-ESU-OzetteSockeye2020')
library(ggplot2)
out$NUMBER_OF_SPAWNERS[out$NUMBER_OF_SPAWNERS==-99] <- NA
ggplot(out, aes(x=YEAR, y=NUMBER_OF_SPAWNERS)) + 
  geom_point(na.rm = TRUE) +
  ggtitle('Ozette-Lake-Sockeye-Salmon-ESU-OzetteSockeye2020') +
  facet_wrap(~COMMON_POPULATION_NAME) +
  theme(axis.text.x = element_text(angle = 45, vjust = 1, hjust=1))

out$FRACWILD[out$FRACWILD == -99] <- NA
ggplot(out, aes(x=YEAR, y=FRACWILD)) +
  geom_point(na.rm = TRUE) +
  ggtitle('Fraction Wild') +
  ylim(0,1) +
  facet_wrap(~COMMON_POPULATION_NAME) +
  theme(axis.text.x = element_text(angle = 45, vjust = 1, hjust=1))

Puget-Sound-PSchinook2020

Description

Spawner and fraction wild data. Species: Chinook. Method: Survey. View raw data or Download raw data

Format

A csv file.

SERIES: For certain populations, there are multiple types of spawner count data. For example survey and model counts that are based on different methods. In this case, the 'Series' column gives a name for the dataset to distinguish it from other data sets of the same population.
ESU: ESU or DPS name.
SPECIES: Species name.
METHOD: Method for the spawner count. Survey refers to a spawning ground survey; the count itself is an expansion. See the SPS (database link in sources below) for the details for the data. LadderCount is a weir or dam count. Model refers to the DABOM model that expands from PIT tag data. GSI is an expansion based on the BOXCAR model, which uses GSI to allocate fish sampled at Lower Granite Dam.
MAJOR_POPULATION_GROUP: Major population group within the ESU or DPS.
NMFS_POPID: NWFSC id for the population.
POPULATION_NAME: Long population name.
COMMON_POPULATION_NAME: Shorter population name used in Viability Report figures and tables.
RUN_TIMING: Run timing (fall, winter, spring, etc). If missing, see the ESU/DPS name or may not be applicable for the species.
YEAR: Integer in XXXX format. The year that the count was made. See details for ESU or DPS specific comments.
NUMBER_OF_SPAWNERS: Total spawners or escapement count. -99 means missing count. May be integer or decimal.
FRACWILD: Decimal between 0 and 1. Fraction wild or natural. -99 means missing information.
CONTRIBUTOR: Data contributor. Listed under Source below.
COMPILER: NWFSC staff who compiled the data file: Katie Barnes
CITATION: Data citation. Listed under References below.

Source

North Fork Nooksack Chinook: WDFW, Stillaguamish Tribe
South Fork Nooksack Chinook: WDFW, Muckleshoot Tribe
Lower Skagit Chinook: WDFW, Skagit River System Coop
Upper Skagit Chinook: WDFW, Jamestown S'Klallam Tribe
Upper Cascade Chinook (Skagit): WDFW, Nooksack Tribe, Lummi Nation
Lower Sauk Chinook (Skagit): WDFW, Skagit River System Coop
Upper Sauk Chinook (Skagit): WDFW, Skagit River System Coop
Suiattle Chinook (Skagit): WDFW, Skagit River System Coop
North Fork Stillaguamish Chinook: WDFW, Stillaguamish Tribe
South Fork Stillaguamish Chinook: WDFW, Stillaguamish Tribe, Tulalip Tribe
Skykomish Chinook (Snohomish): WDFW, Tulalip Tribe
Snoqualmie Chinook (Snohomish): WDFW, Tulalip Tribe
Sammamish Chinook: WDFW, Muckleshoot Tribe
Cedar Chinook: WDFW, Muckleshoot Tribe
Green River Chinook: WDFW, Muckleshoot Tribe
White River Chinook: WDFW, Muckleshoot Tribe, Puyallup Tribe
Puyallup Chinook: WDFW, Muckleshoot Tribe, Puyallup Tribe
Nisqually Chinook: WDFW, Nisqually Tribe
Skokomish Chinook: WDFW, Jamestown S'klallam Tribe, Point No Point Treaty COuncil, Port Gamble S'klallam Tribe, Skokomish Tribe
Mid-Hood Canal Chinook: WDFW, Skokomish Tribe, Point No Point Treaty COuncil, Port Gamble S'klallam Tribe Jamestown S'klallam Tribe
Dungeness Chinook: WDFW, Jamestown S'Klallam Tribe
Elwha Chinook: WDFW, Elwha Tribe

References

Salmon Population Summaries (SPS) Database: https://www.fisheries.noaa.gov/resource/tool-app/salmon-population-summaries-sps

Original source:

North Fork Nooksack Chinook: Puget Sound Chinook Natural Origin Spawner Abundance (1984-2018). Spawner abundance data. Stillaguamish Tribe and Washington Department of Fish and Wildlife. Personal communication with Mindy Rowse 2020.
South Fork Nooksack Chinook: Puget Sound Chinook Natural Origin Spawner Abundance (1984-2018). Spawner abundance data. Muckleshoot Tribe and Washington Department of Fish and Wildlife. Personal communication with Mindy Rowse 2020.
Lower Skagit Chinook: Puget Sound Chinook Natural Origin Spawner Abundance (1952-2018). Spawner abundance data. Skagit River System Coop and Washington Department of Fish and Wildlife. Personal communication with Mindy Rowse 2020.
Upper Skagit Chinook: Puget Sound Chinook Natural Origin Spawner Abundance (1952-2018). Spawner abundance data. Jamestown S'klallam Tribe and Washington Department of Fish and Wildlife. Personal communication with Mindy Rowse 2020.
Upper Cascade Chinook (Skagit): Puget Sound Chinook Natural Origin Spawner Abundance (1984-2018). Spawner abundance data. Lummi Nation, Nooksack Tribe, and Washington Department of Fish and Wildlife. Personal communication with Mindy Rowse 2020.
Lower Sauk Chinook (Skagit): Puget Sound Chinook Natural Origin Spawner Abundance (1952-2018). Spawner abundance data. Skagit River System Coop and Washington Department of Fish and Wildlife. Personal communication with Mindy Rowse 2020.
Upper Sauk Chinook (Skagit): Puget Sound Chinook Natural Origin Spawner Abundance (1952-2018). Spawner abundance data. Skagit River System Coop and Washington Department of Fish and Wildlife. Personal communication with Mindy Rowse 2020.
Suiattle Chinook (Skagit): Puget Sound Chinook Natural Origin Spawner Abundance (1952-2018). Spawner abundance data. Skagit River System Coop and Washington Department of Fish and Wildlife. Personal communication with Mindy Rowse 2020.
North Fork Stillaguamish Chinook: Puget Sound Chinook Natural Origin Spawner Abundance (1974-2019). Spawner abundance data. Stillaguamish Tribe and Washington Department of Fish and Wildlife. Personal communication with Mindy Rowse 2020.
South Fork Stillaguamish Chinook: Puget Sound Chinook Natural Origin Spawner Abundance (1974-2019). Spawner abundance data. Stillaguamish Tribe, Tulalip Tribe, and Washington Department of Fish and Wildlife. Personal communication with Mindy Rowse 2020.
Skykomish Chinook (Snohomish): Puget Sound Chinook Natural Origin Spawner Abundance (1965-2019). Spawner abundance data. Tulalip Tribe and Washington Department of Fish and Wildlife. Personal communication with Mindy Rowse 2020.
Snoqualmie Chinook (Snohomish): Puget Sound Chinook Natural Origin Spawner Abundance (1965-2019). Spawner abundance data. Tulalip Tribe and Washington Department of Fish and Wildlife. Personal communication with Mindy Rowse 2020.
Sammamish Chinook: Puget Sound Chinook Natural Origin Spawner Abundance (1983-2019). Spawner abundance data. Muckleshoot Tribe and Washington Department of Fish and Wildlife. Personal communication with Mindy Rowse 2020.
Cedar Chinook: Puget Sound Chinook Natural Origin Spawner Abundance (1965-2019). Spawner abundance data. Muckleshoot Tribe and Washington Department of Fish and Wildlife. Personal communication with Mindy Rowse 2020.
Green River Chinook: Puget Sound Chinook Natural Origin Spawner Abundance (1968-2019). Spawner abundance data. Muckleshoot Tribe and Washington Department of Fish and Wildlife. Personal communication with Mindy Rowse 2020.
White River Chinook: Puget Sound Chinook Natural Origin Spawner Abundance (1965-2019). Spawner abundance data. Muckleshoot Tribe, Puyallup Tribe, and Washington Department of Fish and Wildlife. Personal communication with Mindy Rowse 2020.
Puyallup Chinook: Puget Sound Chinook Natural Origin Spawner Abundance (1968-2019). Spawner abundance data. Muckleshoot Tribe, Puyallup Tribe, and Washington Department of Fish and Wildlife. Personal communication with Mindy Rowse 2020.
Nisqually Chinook: Puget Sound Chinook Natural Origin Spawner Abundance (1968-2018). Spawner abundance data. Nisqually Tribe and Washington Department of Fish and Wildlife. Personal communication with Mindy Rowse 2020.
Skokomish Chinook: Puget Sound Chinook Natural Origin Spawner Abundance (1968-2018). Spawner abundance data. Jamestown S'klallam Tribe, Point No Point Treaty Council, Port Gamble S'klallam Tribe, Skokomish Tribe, and Washington Department of Fish and Wildlife. Personal communication with Mindy Rowse 2020.
Mid-Hood Canal Chinook: Puget Sound Chinook Natural Origin Spawner Abundance (1968-2018). Spawner abundance data. Jamestown S'klallam Tribe, Point No Point Treaty Council, Port Gamble S'klallam Tribe, Skokomish Tribe, and Washington Department of Fish and Wildlife. Personal communication with Mindy Rowse 2020.
Dungeness Chinook: Puget Sound Chinook Natural Origin Spawner Abundance (1968-2018). Spawner abundance data. Jamestown S'klallam Tribe and Washington Department of Fish and Wildlife. Personal communication with Mindy Rowse 2020.
Elwha Chinook: Puget Sound Chinook Natural Origin Spawner Abundance (1986-2018). Spawner abundance data. Elwha Tribe and Washington Department of Fish and Wildlife. Personal communication with Mindy Rowse 2020.

Examples

data('Puget-Sound-PSchinook2020')
library(ggplot2)
out$NUMBER_OF_SPAWNERS[out$NUMBER_OF_SPAWNERS==-99] <- NA
ggplot(out, aes(x=YEAR, y=NUMBER_OF_SPAWNERS)) + 
  geom_point(na.rm = TRUE) +
  ggtitle('Puget-Sound-PSchinook2020') +
  facet_wrap(~COMMON_POPULATION_NAME) +
  theme(axis.text.x = element_text(angle = 45, vjust = 1, hjust=1), 
   strip.text.x = element_text(size = 6))

out$FRACWILD[out$FRACWILD == -99] <- NA
ggplot(out, aes(x=YEAR, y=FRACWILD)) +
  geom_point(na.rm = TRUE) +
  ggtitle('Fraction Wild') +
  ylim(0,1) +
  facet_wrap(~COMMON_POPULATION_NAME) +
  theme(axis.text.x = element_text(angle = 45, vjust = 1, hjust=1), 
   strip.text.x = element_text(size = 6))
data('Puget-Sound-PSchinook2020')
library(ggplot2)
out$NUMBER_OF_SPAWNERS[out$NUMBER_OF_SPAWNERS==-99] <- NA
ggplot(out, aes(x=YEAR, y=NUMBER_OF_SPAWNERS)) + 
  geom_point(na.rm = TRUE) +
  ggtitle('Puget-Sound-PSchinook2020') +
  facet_wrap(~COMMON_POPULATION_NAME) +
  theme(axis.text.x = element_text(angle = 45, vjust = 1, hjust=1), 
   strip.text.x = element_text(size = 6))

out$FRACWILD[out$FRACWILD == -99] <- NA
ggplot(out, aes(x=YEAR, y=FRACWILD)) +
  geom_point(na.rm = TRUE) +
  ggtitle('Fraction Wild') +
  ylim(0,1) +
  facet_wrap(~COMMON_POPULATION_NAME) +
  theme(axis.text.x = element_text(angle = 45, vjust = 1, hjust=1), 
   strip.text.x = element_text(size = 6))

Salmon-Chinook-Lower-Columbia-River-ESU-LCchinook2020

Description

Spawner and fraction wild data. Species: Chinook salmon. Method: Survey. View raw data or Download raw data

Format

A csv file.

SERIES: For certain populations, there are multiple types of spawner count data. For example survey and model counts that are based on different methods. In this case, the 'Series' column gives a name for the dataset to distinguish it from other data sets of the same population.
ESU: ESU or DPS name.
SPECIES: Species name.
METHOD: Method for the spawner count. Survey refers to a spawning ground survey; the count itself is an expansion. See the SPS (database link in sources below) for the details for the data. LadderCount is a weir or dam count. Model refers to the DABOM model that expands from PIT tag data. GSI is an expansion based on the BOXCAR model, which uses GSI to allocate fish sampled at Lower Granite Dam.
MAJOR_POPULATION_GROUP: Major population group within the ESU or DPS.
NMFS_POPID: NWFSC id for the population.
POPULATION_NAME: Long population name.
COMMON_POPULATION_NAME: Shorter population name used in Viability Report figures and tables.
RUN_TIMING: Run timing (fall, winter, spring, etc). If missing, see the ESU/DPS name or may not be applicable for the species.
YEAR: Integer in XXXX format. The year that the count was made. See details for ESU or DPS specific comments.
NUMBER_OF_SPAWNERS: Total spawners or escapement count. -99 means missing count. May be integer or decimal.
FRACWILD: Decimal between 0 and 1. Fraction wild or natural. -99 means missing information.
CONTRIBUTOR: Data contributor. Listed under Source below.
COMPILER: NWFSC staff who compiled the data file: Mari Williams
CITATION: Data citation. Listed under References below.

Source

Grays/Chinook Fall (Tule) Chinook: Washington Department of Fish and Wildlife
Youngs Bay: Oregon Department of Fish and Wildlife
Big Creek: Oregon Department of Fish and Wildlife
Elochoman/Skamokawa Fall (Tule) Chinook: Washington Department of Fish and Wildlife
Clatskanie River: Washington Department of Fish and Wildlife
Mill/Abernathy/Germany Creeks Fall (Tule) Chinook: Washington Department of Fish and Wildlife
Lower Cowlitz Fall (Tule) Chinook: Washington Department of Fish and Wildlife
Coweeman Fall (Tule) Chinook: Washington Department of Fish and Wildlife
Toutle Fall (Tule) Chinook: Washington Department of Fish and Wildlife
Upper Cowlitz Fall (Tule) Chinook: Washington Department of Fish and Wildlife
Kalama Fall (Tule) Chinook: Washington Department of Fish and Wildlife
Lewis River Fall (Tule) Chinook: Washington Department of Fish and Wildlife
Sandy River: Oregon Department of Fish and Wildlife
Clackamas River: Oregon Department of Fish and Wildlife
Washougal Fall (Tule) Chinook: Washington Department of Fish and Wildlife
Lewis River Late Fall (Bright) Chinook: Washington Department of Fish and Wildlife
Upper Cowlitz and Cispus Spring Chinook: Washington Department of Fish and Wildlife
Kalama Spring Chinook: Washington Department of Fish and Wildlife
North Fork Lewis Spring Chinook: Washington Department of Fish and Wildlife
Lower Gorge (Columbia) Late Fall (Bright) Chinook: Washington Department of Fish and Wildlife
Upper Gorge (Columbia) Fall (Tule) Chinook: Washington Department of Fish and Wildlife
Big White Salmon River Fall (Tule) Chinook: Washington Department of Fish and Wildlife
Big White Salmon River Spring Chinook: Washington Department of Fish and Wildlife

References

Salmon Population Summaries (SPS) Database: https://www.fisheries.noaa.gov/resource/tool-app/salmon-population-summaries-sps

Original source:

Grays/Chinook Fall (Tule) Chinook: Lower Columbia River Chinook Natural Origin Spawner Abundance Dataset (1964-2018). Spawner abundance data. Washington Department of Fish and Wildlife. Protocol and Methods available at https://fortress.wa.gov/dfw/score/score/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/PSMFC.
Youngs Bay: Lower Columbia River Chinook Natural Origin Spawner Abundance Dataset (2012-2018). Spawner abundance data. Oregon Department of Fish and Wildlife. Protocol and Methods available at http://odfwrecoverytracker.org/metadata/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/PSMFC.
Big Creek: Lower Columbia River Chinook Natural Origin Spawner Abundance Dataset (2012-2018). Spawner abundance data. Oregon Department of Fish and Wildlife. Protocol and Methods available at http://odfwrecoverytracker.org/metadata/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/PSMFC.
Elochoman/Skamokawa Fall (Tule) Chinook: Lower Columbia River Chinook Natural Origin Spawner Abundance Dataset (1964-2018). Spawner abundance data. Washington Department of Fish and Wildlife. Protocol and Methods available at https://fortress.wa.gov/dfw/score/score/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/PSMFC.
Clatskanie River: Lower Columbia River Chinook Natural Origin Spawner Abundance Dataset (2002-2018). Spawner abundance data. Washington Department of Fish and Wildlife. Protocol and Methods available at https://fortress.wa.gov/dfw/score/score/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/PSMFC.
Mill/Abernathy/Germany Creeks Fall (Tule) Chinook: Lower Columbia River Chinook Natural Origin Spawner Abundance Dataset (1981-2018). Spawner abundance data. Washington Department of Fish and Wildlife. Protocol and Methods available at https://fortress.wa.gov/dfw/score/score/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/PSMFC.
Lower Cowlitz Fall (Tule) Chinook: Lower Columbia River Chinook Natural Origin Spawner Abundance Dataset (1964-2018). Spawner abundance data. Washington Department of Fish and Wildlife. Protocol and Methods available at https://fortress.wa.gov/dfw/score/score/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/PSMFC.
Coweeman Fall (Tule) Chinook: Lower Columbia River Chinook Natural Origin Spawner Abundance Dataset (1964-2018). Spawner abundance data. Washington Department of Fish and Wildlife. Protocol and Methods available at https://fortress.wa.gov/dfw/score/score/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/PSMFC.
Toutle Fall (Tule) Chinook: Lower Columbia River Chinook Natural Origin Spawner Abundance Dataset (1964-2018). Spawner abundance data. Washington Department of Fish and Wildlife. Protocol and Methods available at https://fortress.wa.gov/dfw/score/score/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/PSMFC.
Upper Cowlitz Fall (Tule) Chinook: Lower Columbia River Chinook Natural Origin Spawner Abundance Dataset (1996-2018). Spawner abundance data. Washington Department of Fish and Wildlife. Protocol and Methods available at https://fortress.wa.gov/dfw/score/score/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/PSMFC.
Kalama Fall (Tule) Chinook: Lower Columbia River Chinook Natural Origin Spawner Abundance Dataset (1964-2018). Spawner abundance data. Washington Department of Fish and Wildlife. Protocol and Methods available at https://fortress.wa.gov/dfw/score/score/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/PSMFC.
Lewis River Fall (Tule) Chinook: Lower Columbia River Chinook Natural Origin Spawner Abundance Dataset (1997-2019). Spawner abundance data. Washington Department of Fish and Wildlife. Protocol and Methods available at https://fortress.wa.gov/dfw/score/score/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/PSMFC.
Sandy River: Lower Columbia River Chinook Natural Origin Spawner Abundance Dataset (2009-2019). Spawner abundance data. Oregon Department of Fish and Wildlife. Protocol and Methods available at http://odfwrecoverytracker.org/metadata/. Personal Communication with Jamie Anthony by Mari Williams, NOAAF NWFSC/PSMFC.
Sandy River: Lower Columbia River Chinook Natural Origin Spawner Abundance Dataset (1981-2006). Spawner abundance data. Oregon Department of Fish and Wildlife. Protocol and Methods available at http://odfwrecoverytracker.org/metadata/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/PSMFC.
Sandy River: Lower Columbia River Chinook Natural Origin Spawner Abundance Dataset (2013-2018). Spawner abundance data. Oregon Department of Fish and Wildlife. Protocol and Methods available at http://odfwrecoverytracker.org/metadata/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/PSMFC.
Clackamas River: Lower Columbia River Chinook Natural Origin Spawner Abundance Dataset (2012-2018). Spawner abundance data. Oregon Department of Fish and Wildlife. Protocol and Methods available at http://odfwrecoverytracker.org/metadata/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/PSMFC.
Washougal Fall (Tule) Chinook: Lower Columbia River Chinook Natural Origin Spawner Abundance Dataset (1964-2018). Spawner abundance data. Washington Department of Fish and Wildlife. Protocol and Methods available at https://fortress.wa.gov/dfw/score/score/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/PSMFC.
Lewis River Late Fall (Bright) Chinook: Lower Columbia River Chinook Natural Origin Spawner Abundance Dataset (1964-2018). Spawner abundance data. Washington Department of Fish and Wildlife. Protocol and Methods available at https://fortress.wa.gov/dfw/score/score/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/PSMFC.
Upper Cowlitz and Cispus Spring Chinook: Lower Columbia River Chinook Natural Origin Spawner Abundance Dataset (2014-2018). Spawner abundance data. Washington Department of Fish and Wildlife. Protocol and Methods available at https://fortress.wa.gov/dfw/score/score/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/PSMFC.
Kalama Spring Chinook: Lower Columbia River Chinook Natural Origin Spawner Abundance Dataset (1980-2019). Spawner abundance data. Washington Department of Fish and Wildlife. Protocol and Methods available at https://fortress.wa.gov/dfw/score/score/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/PSMFC.
North Fork Lewis Spring Chinook: Lower Columbia River Chinook Natural Origin Spawner Abundance Dataset (1980-2018). Spawner abundance data. Washington Department of Fish and Wildlife. Protocol and Methods available at https://fortress.wa.gov/dfw/score/score/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/PSMFC.
Lower Gorge (Columbia) Late Fall (Bright) Chinook: Lower Columbia River Chinook Natural Origin Spawner Abundance Dataset (1994-2018). Spawner abundance data. Washington Department of Fish and Wildlife. Protocol and Methods available at https://fortress.wa.gov/dfw/score/score/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/PSMFC.
Upper Gorge (Columbia) Fall (Tule) Chinook: Lower Columbia River Chinook Natural Origin Spawner Abundance Dataset (1997-2018). Spawner abundance data. Washington Department of Fish and Wildlife. Protocol and Methods available at https://fortress.wa.gov/dfw/score/score/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/PSMFC.
Big White Salmon River Fall (Tule) Chinook: Lower Columbia River Chinook Natural Origin Spawner Abundance Dataset (1965-2018). Spawner abundance data. Washington Department of Fish and Wildlife. Protocol and Methods available at https://fortress.wa.gov/dfw/score/score/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/PSMFC.
Big White Salmon River Spring Chinook: Lower Columbia River Chinook Natural Origin Spawner Abundance Dataset (2013-2018). Spawner abundance data. Washington Department of Fish and Wildlife. Protocol and Methods available at https://fortress.wa.gov/dfw/score/score/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/PSMFC.

Examples

data('Salmon-Chinook-Lower-Columbia-River-ESU-LCchinook2020')
library(ggplot2)
out$NUMBER_OF_SPAWNERS[out$NUMBER_OF_SPAWNERS==-99] <- NA
ggplot(out, aes(x=YEAR, y=NUMBER_OF_SPAWNERS)) + 
  geom_point(na.rm = TRUE) +
  ggtitle('Salmon-Chinook-Lower-Columbia-River-ESU-LCchinook2020') +
  facet_wrap(~COMMON_POPULATION_NAME) +
  theme(axis.text.x = element_text(angle = 45, vjust = 1, hjust=1), 
   strip.text.x = element_text(size = 6))

out$FRACWILD[out$FRACWILD == -99] <- NA
ggplot(out, aes(x=YEAR, y=FRACWILD)) +
  geom_point(na.rm = TRUE) +
  ggtitle('Fraction Wild') +
  ylim(0,1) +
  facet_wrap(~COMMON_POPULATION_NAME) +
  theme(axis.text.x = element_text(angle = 45, vjust = 1, hjust=1), 
   strip.text.x = element_text(size = 6))
data('Salmon-Chinook-Lower-Columbia-River-ESU-LCchinook2020')
library(ggplot2)
out$NUMBER_OF_SPAWNERS[out$NUMBER_OF_SPAWNERS==-99] <- NA
ggplot(out, aes(x=YEAR, y=NUMBER_OF_SPAWNERS)) + 
  geom_point(na.rm = TRUE) +
  ggtitle('Salmon-Chinook-Lower-Columbia-River-ESU-LCchinook2020') +
  facet_wrap(~COMMON_POPULATION_NAME) +
  theme(axis.text.x = element_text(angle = 45, vjust = 1, hjust=1), 
   strip.text.x = element_text(size = 6))

out$FRACWILD[out$FRACWILD == -99] <- NA
ggplot(out, aes(x=YEAR, y=FRACWILD)) +
  geom_point(na.rm = TRUE) +
  ggtitle('Fraction Wild') +
  ylim(0,1) +
  facet_wrap(~COMMON_POPULATION_NAME) +
  theme(axis.text.x = element_text(angle = 45, vjust = 1, hjust=1), 
   strip.text.x = element_text(size = 6))

Salmon-Chinook-Snake-River-fall-run-ESU-ICSRFchinook2021

Description

Spawner and fraction wild data. Species: Chinook salmon. Method: Survey. View raw data or Download raw data

Format

A csv file.

SERIES: For certain populations, there are multiple types of spawner count data. For example survey and model counts that are based on different methods. In this case, the 'Series' column gives a name for the dataset to distinguish it from other data sets of the same population.
ESU: ESU or DPS name.
SPECIES: Species name.
METHOD: Method for the spawner count. Survey refers to a spawning ground survey; the count itself is an expansion. See the SPS (database link in sources below) for the details for the data. LadderCount is a weir or dam count. Model refers to the DABOM model that expands from PIT tag data. GSI is an expansion based on the BOXCAR model, which uses GSI to allocate fish sampled at Lower Granite Dam.
MAJOR_POPULATION_GROUP: Major population group within the ESU or DPS.
NMFS_POPID: NWFSC id for the population.
POPULATION_NAME: Long population name.
COMMON_POPULATION_NAME: Shorter population name used in Viability Report figures and tables.
RUN_TIMING: Run timing (fall, winter, spring, etc). If missing, see the ESU/DPS name or may not be applicable for the species.
YEAR: Integer in XXXX format. The year that the count was made. See details for ESU or DPS specific comments.
NUMBER_OF_SPAWNERS: Total spawners or escapement count. -99 means missing count. May be integer or decimal.
FRACWILD: Decimal between 0 and 1. Fraction wild or natural. -99 means missing information.
CONTRIBUTOR: Data contributor. Listed under Source below.
COMPILER: NWFSC staff who compiled the data file: Mari Williams
CITATION: Data citation. Listed under References below.

Source

Nez Perce Tribe

References

Salmon Population Summaries (SPS) Database: https://www.fisheries.noaa.gov/resource/tool-app/salmon-population-summaries-sps

Original source: Snake River fall Chinook Natural Origin Spawner Abundance Dataset (1975-2019). Spawner abundance data. Nez Perce Tribe. Personal communication with Bill Young email 3172021 by Mari Williams, NOAAF NWFSC/PSMFC..

Examples

data('Salmon-Chinook-Snake-River-fall-run-ESU-ICSRFchinook2021')
library(ggplot2)
out$NUMBER_OF_SPAWNERS[out$NUMBER_OF_SPAWNERS==-99] <- NA
ggplot(out, aes(x=YEAR, y=NUMBER_OF_SPAWNERS)) + 
  geom_point(na.rm = TRUE) +
  ggtitle('Salmon-Chinook-Snake-River-fall-run-ESU-ICSRFchinook2021') +
  facet_wrap(~COMMON_POPULATION_NAME) +
  theme(axis.text.x = element_text(angle = 45, vjust = 1, hjust=1))

out$FRACWILD[out$FRACWILD == -99] <- NA
ggplot(out, aes(x=YEAR, y=FRACWILD)) +
  geom_point(na.rm = TRUE) +
  ggtitle('Fraction Wild') +
  ylim(0,1) +
  facet_wrap(~COMMON_POPULATION_NAME) +
  theme(axis.text.x = element_text(angle = 45, vjust = 1, hjust=1))
data('Salmon-Chinook-Snake-River-fall-run-ESU-ICSRFchinook2021')
library(ggplot2)
out$NUMBER_OF_SPAWNERS[out$NUMBER_OF_SPAWNERS==-99] <- NA
ggplot(out, aes(x=YEAR, y=NUMBER_OF_SPAWNERS)) + 
  geom_point(na.rm = TRUE) +
  ggtitle('Salmon-Chinook-Snake-River-fall-run-ESU-ICSRFchinook2021') +
  facet_wrap(~COMMON_POPULATION_NAME) +
  theme(axis.text.x = element_text(angle = 45, vjust = 1, hjust=1))

out$FRACWILD[out$FRACWILD == -99] <- NA
ggplot(out, aes(x=YEAR, y=FRACWILD)) +
  geom_point(na.rm = TRUE) +
  ggtitle('Fraction Wild') +
  ylim(0,1) +
  facet_wrap(~COMMON_POPULATION_NAME) +
  theme(axis.text.x = element_text(angle = 45, vjust = 1, hjust=1))

Salmon-Chinook-Snake-River-spring-summer-run-ESU-ICSRSSchinookModel

Description

Spawner and fraction wild data. Species: Chinook salmon. Method: Model. View raw data or Download raw data

Format

A csv file.

SERIES: For certain populations, there are multiple types of spawner count data. For example survey and model counts that are based on different methods. In this case, the 'Series' column gives a name for the dataset to distinguish it from other data sets of the same population.
ESU: ESU or DPS name.
SPECIES: Species name.
METHOD: Method for the spawner count. Survey refers to a spawning ground survey; the count itself is an expansion. See the SPS (database link in sources below) for the details for the data. LadderCount is a weir or dam count. Model refers to the DABOM model that expands from PIT tag data. GSI is an expansion based on the BOXCAR model, which uses GSI to allocate fish sampled at Lower Granite Dam.
MAJOR_POPULATION_GROUP: Major population group within the ESU or DPS.
NMFS_POPID: NWFSC id for the population.
POPULATION_NAME: Long population name.
COMMON_POPULATION_NAME: Shorter population name used in Viability Report figures and tables.
RUN_TIMING: Run timing (fall, winter, spring, etc). If missing, see the ESU/DPS name or may not be applicable for the species.
YEAR: Integer in XXXX format. The year that the count was made. See details for ESU or DPS specific comments.
NUMBER_OF_SPAWNERS: Total spawners or escapement count. -99 means missing count. May be integer or decimal.
FRACWILD: Decimal between 0 and 1. Fraction wild or natural. -99 means missing information.
CONTRIBUTOR: Data contributor. Listed under Source below.
COMPILER: NWFSC staff who compiled the data file: Mari Williams
CITATION: Data citation. Listed under References below.

Source

Nez Perce Tribe

References

Salmon Population Summaries (SPS) Database: https://www.fisheries.noaa.gov/resource/tool-app/salmon-population-summaries-sps

Original source:

Bear Valley Creek: Snake River spring/summer Chinook Natural Origin Spawner Abundance Dataset (2015-2019). Spawner abundance data. Nez Perce Tribe. Protocol and Methods available at https://www.monitoringresources.org/Document/Protocol/Details/2187. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/PSMFC.
Big Creek: Snake River spring/summer Chinook Natural Origin Spawner Abundance Dataset (2011-2019). Spawner abundance data. Nez Perce Tribe. Protocol and Methods available at https://www.monitoringresources.org/Document/Protocol/Details/2187. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/PSMFC.
Big Sheep Creek: Snake River spring/summer Chinook Natural Origin Spawner Abundance Dataset (2011-2019). Spawner abundance data. Nez Perce Tribe. Protocol and Methods available at https://www.monitoringresources.org/Document/Protocol/Details/2187. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/PSMFC.
Catherine Creek: Snake River spring/summer Chinook Natural Origin Spawner Abundance Dataset (2010-2019). Spawner abundance data. Nez Perce Tribe. Protocol and Methods available at https://www.monitoringresources.org/Document/Protocol/Details/2187. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/PSMFC.
East Fork Salmon River: Snake River spring/summer Chinook Natural Origin Spawner Abundance Dataset (2010-2017). Spawner abundance data. Nez Perce Tribe. Protocol and Methods available at https://www.monitoringresources.org/Document/Protocol/Details/2187. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/PSMFC.
East Fork South Fork Salmon River: Snake River spring/summer Chinook Natural Origin Spawner Abundance Dataset (2010-2019). Spawner abundance data. Nez Perce Tribe. Protocol and Methods available at https://www.monitoringresources.org/Document/Protocol/Details/2187. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/PSMFC.
Grande Ronde River Upper Mainstem: Snake River spring/summer Chinook Natural Origin Spawner Abundance Dataset (2012-2019). Spawner abundance data. Nez Perce Tribe. Protocol and Methods available at https://www.monitoringresources.org/Document/Protocol/Details/2187. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/PSMFC.
Imnaha River Mainstem: Snake River spring/summer Chinook Natural Origin Spawner Abundance Dataset (2011-2019). Spawner abundance data. Nez Perce Tribe. Protocol and Methods available at https://www.monitoringresources.org/Document/Protocol/Details/2187. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/PSMFC.
Lemhi River: Snake River spring/summer Chinook Natural Origin Spawner Abundance Dataset (2010-2019). Spawner abundance data. Nez Perce Tribe. Protocol and Methods available at https://www.monitoringresources.org/Document/Protocol/Details/2187. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/PSMFC.
Little Salmon River: Snake River spring/summer Chinook Natural Origin Spawner Abundance Dataset (2010-2019). Spawner abundance data. Nez Perce Tribe. Protocol and Methods available at https://www.monitoringresources.org/Document/Protocol/Details/2187. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/PSMFC.
Lookingglass Creek: Snake River spring/summer Chinook Natural Origin Spawner Abundance Dataset (2010-2019). Spawner abundance data. Nez Perce Tribe. Protocol and Methods available at https://www.monitoringresources.org/Document/Protocol/Details/2187. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/PSMFC.
North Fork Salmon River: Snake River spring/summer Chinook Natural Origin Spawner Abundance Dataset (2016-2019). Spawner abundance data. Nez Perce Tribe. Protocol and Methods available at https://www.monitoringresources.org/Document/Protocol/Details/2187. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/PSMFC.
Pahsimeroi River: Snake River spring/summer Chinook Natural Origin Spawner Abundance Dataset (2012-2019). Spawner abundance data. Nez Perce Tribe. Protocol and Methods available at https://www.monitoringresources.org/Document/Protocol/Details/2187. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/PSMFC.
Panther Creek: Snake River spring/summer Chinook Natural Origin Spawner Abundance Dataset (2018-2019). Spawner abundance data. Nez Perce Tribe. Protocol and Methods available at https://www.monitoringresources.org/Document/Protocol/Details/2187. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/PSMFC.
Salmon River Lower Mainstem: Snake River spring/summer Chinook Natural Origin Spawner Abundance Dataset (2013-2019). Spawner abundance data. Nez Perce Tribe. Protocol and Methods available at https://www.monitoringresources.org/Document/Protocol/Details/2187. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/PSMFC.
Salmon River Upper Mainstem: Snake River spring/summer Chinook Natural Origin Spawner Abundance Dataset (2010-2019). Spawner abundance data. Nez Perce Tribe. Protocol and Methods available at https://www.monitoringresources.org/Document/Protocol/Details/2187. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/PSMFC.
Secesh River: Snake River spring/summer Chinook Natural Origin Spawner Abundance Dataset (2010-2019). Spawner abundance data. Nez Perce Tribe. Protocol and Methods available at https://www.monitoringresources.org/Document/Protocol/Details/2187. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/PSMFC.
Tucannon River: Snake River spring/summer Chinook Natural Origin Spawner Abundance Dataset (2010-2017). Spawner abundance data. Nez Perce Tribe. Protocol and Methods available at https://www.monitoringresources.org/Document/Protocol/Details/2187. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/PSMFC.
Valley Creek: Snake River spring/summer Chinook Natural Origin Spawner Abundance Dataset (2010-2019). Spawner abundance data. Nez Perce Tribe. Protocol and Methods available at https://www.monitoringresources.org/Document/Protocol/Details/2187. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/PSMFC.
Yankee Fork: Snake River spring/summer Chinook Natural Origin Spawner Abundance Dataset (2012-2019). Spawner abundance data. Nez Perce Tribe. Protocol and Methods available at https://www.monitoringresources.org/Document/Protocol/Details/2187. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/PSMFC.

Examples

data('Salmon-Chinook-Snake-River-spring-summer-run-ESU-ICSRSSchinookModel')
library(ggplot2)
out$NUMBER_OF_SPAWNERS[out$NUMBER_OF_SPAWNERS==-99] <- NA
ggplot(out, aes(x=YEAR, y=NUMBER_OF_SPAWNERS)) + 
  geom_point(na.rm = TRUE) +
  ggtitle('Salmon-Chinook-Snake-River-spring-summer-run-ESU-ICSRSSchinookModel') +
  facet_wrap(~COMMON_POPULATION_NAME) +
  theme(axis.text.x = element_text(angle = 45, vjust = 1, hjust=1), 
   strip.text.x = element_text(size = 6))

out$FRACWILD[out$FRACWILD == -99] <- NA
ggplot(out, aes(x=YEAR, y=FRACWILD)) +
  geom_point(na.rm = TRUE) +
  ggtitle('Fraction Wild') +
  ylim(0,1) +
  facet_wrap(~COMMON_POPULATION_NAME) +
  theme(axis.text.x = element_text(angle = 45, vjust = 1, hjust=1), 
   strip.text.x = element_text(size = 6))
data('Salmon-Chinook-Snake-River-spring-summer-run-ESU-ICSRSSchinookModel')
library(ggplot2)
out$NUMBER_OF_SPAWNERS[out$NUMBER_OF_SPAWNERS==-99] <- NA
ggplot(out, aes(x=YEAR, y=NUMBER_OF_SPAWNERS)) + 
  geom_point(na.rm = TRUE) +
  ggtitle('Salmon-Chinook-Snake-River-spring-summer-run-ESU-ICSRSSchinookModel') +
  facet_wrap(~COMMON_POPULATION_NAME) +
  theme(axis.text.x = element_text(angle = 45, vjust = 1, hjust=1), 
   strip.text.x = element_text(size = 6))

out$FRACWILD[out$FRACWILD == -99] <- NA
ggplot(out, aes(x=YEAR, y=FRACWILD)) +
  geom_point(na.rm = TRUE) +
  ggtitle('Fraction Wild') +
  ylim(0,1) +
  facet_wrap(~COMMON_POPULATION_NAME) +
  theme(axis.text.x = element_text(angle = 45, vjust = 1, hjust=1), 
   strip.text.x = element_text(size = 6))

Salmon-Chinook-Snake-River-spring-summer-run-ESU-ICSRSSchinookSurvey2020

Description

Spawner and fraction wild data. Species: Chinook salmon. Method: Survey. View raw data or Download raw data

Format

A csv file.

SERIES: For certain populations, there are multiple types of spawner count data. For example survey and model counts that are based on different methods. In this case, the 'Series' column gives a name for the dataset to distinguish it from other data sets of the same population.
ESU: ESU or DPS name.
SPECIES: Species name.
METHOD: Method for the spawner count. Survey refers to a spawning ground survey; the count itself is an expansion. See the SPS (database link in sources below) for the details for the data. LadderCount is a weir or dam count. Model refers to the DABOM model that expands from PIT tag data. GSI is an expansion based on the BOXCAR model, which uses GSI to allocate fish sampled at Lower Granite Dam.
MAJOR_POPULATION_GROUP: Major population group within the ESU or DPS.
NMFS_POPID: NWFSC id for the population.
POPULATION_NAME: Long population name.
COMMON_POPULATION_NAME: Shorter population name used in Viability Report figures and tables.
RUN_TIMING: Run timing (fall, winter, spring, etc). If missing, see the ESU/DPS name or may not be applicable for the species.
YEAR: Integer in XXXX format. The year that the count was made. See details for ESU or DPS specific comments.
NUMBER_OF_SPAWNERS: Total spawners or escapement count. -99 means missing count. May be integer or decimal.
FRACWILD: Decimal between 0 and 1. Fraction wild or natural. -99 means missing information.
CONTRIBUTOR: Data contributor. Listed under Source below.
COMPILER: NWFSC staff who compiled the data file: Mari Williams
CITATION: Data citation. Listed under References below.

Source

Johnson Creek: Nez Perce Tribe
Secesh River: Nez Perce Tribe
Tucannon River: Washington Department of Fish and Wildlife
Wenaha River: Oregon Department of Fish and Wildlife
Wallowa/Lostine Rivers: Oregon Department of Fish and Wildlife
Minam River: Oregon Department of Fish and Wildlife
Catherine Creek: Oregon Department of Fish and Wildlife
Grande Ronde Upper Mainstem: Oregon Department of Fish and Wildlife
Imnaha River: Oregon Department of Fish and Wildlife
South Fork Salmon River: Idaho Department of Fish and Game
Chamberlain Creek: Idaho Department of Fish and Game
Middle Fork Salmon River Lower Mainstem: Idaho Department of Fish and Game
Big Creek: Idaho Department of Fish and Game
Camas Creek: Idaho Department of Fish and Game
Loon Creek: Idaho Department of Fish and Game
Middle Fork Salmon River Upper Mainstem: Idaho Department of Fish and Game
Sulphur Creek: Idaho Department of Fish and Game
Marsh Creek: Idaho Department of Fish and Game
Bear Valley Creek: Idaho Department of Fish and Game
North Fork Salmon River: Idaho Department of Fish and Game
Lemhi River: Idaho Department of Fish and Game
Salmon River Lower Mainstem: Idaho Department of Fish and Game
Pahsimeroi River: Idaho Department of Fish and Game
East Fork Salmon River: Idaho Department of Fish and Game
Yankee Fork: Idaho Department of Fish and Game
Salmon River Upper Mainstem: Idaho Department of Fish and Game
Valley Creek: Idaho Department of Fish and Game

References

Salmon Population Summaries (SPS) Database: https://www.fisheries.noaa.gov/resource/tool-app/salmon-population-summaries-sps

Original source:

Johnson Creek: Snake River spring/summer Chinook Natural Origin Spawner Abundance Dataset (1987-2018). Spawner abundance data. Nez Perce Tribe. Protocol and Methods available at https://www.monitoringresources.org/Document/Protocol/Details/2246. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/PSMFC.
Secesh River: Snake River spring/summer Chinook Natural Origin Spawner Abundance Dataset (1997-2018). Spawner abundance data. Nez Perce Tribe. Protocol and Methods available at https://www.monitoringresources.org/Document/Protocol/Details/2246. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/PSMFC.
Tucannon River: Snake River spring/summer Chinook Natural Origin Spawner Abundance Dataset (1954-2019). Spawner abundance data. Washington Department of Fish and Wildlife. Protocol and Methods available at https://fortress.wa.gov/dfw/score/score/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/PSMFC.
Wenaha River: Snake River spring/summer Chinook Natural Origin Spawner Abundance Dataset (1949-2018). Spawner abundance data. Oregon Department of Fish and Wildlife. Protocol and Methods available at http://odfwrecoverytracker.org/metadata/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/PSMFC.
Wallowa/Lostine Rivers: Snake River spring/summer Chinook Natural Origin Spawner Abundance Dataset (1949-2018). Spawner abundance data. Oregon Department of Fish and Wildlife. Protocol and Methods available at http://odfwrecoverytracker.org/metadata/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/PSMFC.
Minam River: Snake River spring/summer Chinook Natural Origin Spawner Abundance Dataset (1954-2018). Spawner abundance data. Oregon Department of Fish and Wildlife. Protocol and Methods available at http://odfwrecoverytracker.org/metadata/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/PSMFC.
Catherine Creek: Snake River spring/summer Chinook Natural Origin Spawner Abundance Dataset (1953-2018). Spawner abundance data. Oregon Department of Fish and Wildlife. Protocol and Methods available at http://odfwrecoverytracker.org/metadata/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/PSMFC.
Grande Ronde Upper Mainstem: Snake River spring/summer Chinook Natural Origin Spawner Abundance Dataset (1953-2018). Spawner abundance data. Oregon Department of Fish and Wildlife. Protocol and Methods available at http://odfwrecoverytracker.org/metadata/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/PSMFC.
Imnaha River: Snake River spring/summer Chinook Natural Origin Spawner Abundance Dataset (1949-2018). Spawner abundance data. Oregon Department of Fish and Wildlife. Protocol and Methods available at http://odfwrecoverytracker.org/metadata/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/PSMFC.
South Fork Salmon River: Snake River spring/summer Chinook Natural Origin Spawner Abundance Dataset (1957-2019). Spawner abundance data. Idaho Department of Fish and Game. Protocol and Methods available at https://www.monitoringmethods.org/Protocol/Details/159. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/PSMFC.
Chamberlain Creek: Snake River spring/summer Chinook Natural Origin Spawner Abundance Dataset (1957-2019). Spawner abundance data. Idaho Department of Fish and Game. Protocol and Methods available at https://www.monitoringmethods.org/Protocol/Details/159. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/PSMFC.
Middle Fork Salmon River Lower Mainstem: Snake River spring/summer Chinook Natural Origin Spawner Abundance Dataset (1957-2019). Spawner abundance data. Idaho Department of Fish and Game. Protocol and Methods available at https://www.monitoringmethods.org/Protocol/Details/159. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/PSMFC.
Big Creek: Snake River spring/summer Chinook Natural Origin Spawner Abundance Dataset (1957-2019). Spawner abundance data. Idaho Department of Fish and Game. Protocol and Methods available at https://www.monitoringmethods.org/Protocol/Details/159. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/PSMFC.
Camas Creek: Snake River spring/summer Chinook Natural Origin Spawner Abundance Dataset (1957-2019). Spawner abundance data. Idaho Department of Fish and Game. Protocol and Methods available at https://www.monitoringmethods.org/Protocol/Details/159. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/PSMFC.
Loon Creek: Snake River spring/summer Chinook Natural Origin Spawner Abundance Dataset (1957-2019). Spawner abundance data. Idaho Department of Fish and Game. Protocol and Methods available at https://www.monitoringmethods.org/Protocol/Details/159. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/PSMFC.
Middle Fork Salmon River Upper Mainstem: Snake River spring/summer Chinook Natural Origin Spawner Abundance Dataset (1957-2019). Spawner abundance data. Idaho Department of Fish and Game. Protocol and Methods available at https://www.monitoringmethods.org/Protocol/Details/159. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/PSMFC.
Sulphur Creek: Snake River spring/summer Chinook Natural Origin Spawner Abundance Dataset (1957-2019). Spawner abundance data. Idaho Department of Fish and Game. Protocol and Methods available at https://www.monitoringmethods.org/Protocol/Details/159. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/PSMFC.
Marsh Creek: Snake River spring/summer Chinook Natural Origin Spawner Abundance Dataset (1957-2019). Spawner abundance data. Idaho Department of Fish and Game. Protocol and Methods available at https://www.monitoringmethods.org/Protocol/Details/159. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/PSMFC.
Bear Valley Creek: Snake River spring/summer Chinook Natural Origin Spawner Abundance Dataset (1957-2019). Spawner abundance data. Idaho Department of Fish and Game. Protocol and Methods available at https://www.monitoringmethods.org/Protocol/Details/159. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/PSMFC.
North Fork Salmon River: Snake River spring/summer Chinook Natural Origin Spawner Abundance Dataset (1957-2019). Spawner abundance data. Idaho Department of Fish and Game. Protocol and Methods available at https://www.monitoringmethods.org/Protocol/Details/159. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/PSMFC.
Lemhi River: Snake River spring/summer Chinook Natural Origin Spawner Abundance Dataset (1957-2019). Spawner abundance data. Idaho Department of Fish and Game. Protocol and Methods available at https://www.monitoringmethods.org/Protocol/Details/159. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/PSMFC.
Salmon River Lower Mainstem: Snake River spring/summer Chinook Natural Origin Spawner Abundance Dataset (1957-2019). Spawner abundance data. Idaho Department of Fish and Game. Protocol and Methods available at https://www.monitoringmethods.org/Protocol/Details/159. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/PSMFC.
Pahsimeroi River: Snake River spring/summer Chinook Natural Origin Spawner Abundance Dataset (1980-2019). Spawner abundance data. Idaho Department of Fish and Game. Protocol and Methods available at https://www.monitoringmethods.org/Protocol/Details/159. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/PSMFC.
East Fork Salmon River: Snake River spring/summer Chinook Natural Origin Spawner Abundance Dataset (1957-2019). Spawner abundance data. Idaho Department of Fish and Game. Protocol and Methods available at https://www.monitoringmethods.org/Protocol/Details/159. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/PSMFC.
Yankee Fork: Snake River spring/summer Chinook Natural Origin Spawner Abundance Dataset (1957-2019). Spawner abundance data. Idaho Department of Fish and Game. Protocol and Methods available at https://www.monitoringmethods.org/Protocol/Details/159. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/PSMFC.
Salmon River Upper Mainstem: Snake River spring/summer Chinook Natural Origin Spawner Abundance Dataset (1957-2019). Spawner abundance data. Idaho Department of Fish and Game. Protocol and Methods available at https://www.monitoringmethods.org/Protocol/Details/159. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/PSMFC.
Valley Creek: Snake River spring/summer Chinook Natural Origin Spawner Abundance Dataset (1957-2019). Spawner abundance data. Idaho Department of Fish and Game. Protocol and Methods available at https://www.monitoringmethods.org/Protocol/Details/159. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/PSMFC.

Examples

data('Salmon-Chinook-Snake-River-spring-summer-run-ESU-ICSRSSchinookSurvey2020')
library(ggplot2)
out$NUMBER_OF_SPAWNERS[out$NUMBER_OF_SPAWNERS==-99] <- NA
ggplot(out, aes(x=YEAR, y=NUMBER_OF_SPAWNERS)) + 
  geom_point(na.rm = TRUE) +
  ggtitle('Salmon-Chinook-Snake-River-spring-summer-run-ESU-ICSRSSchinookSurvey2020') +
  facet_wrap(~COMMON_POPULATION_NAME) +
  theme(axis.text.x = element_text(angle = 45, vjust = 1, hjust=1), 
   strip.text.x = element_text(size = 6))

out$FRACWILD[out$FRACWILD == -99] <- NA
ggplot(out, aes(x=YEAR, y=FRACWILD)) +
  geom_point(na.rm = TRUE) +
  ggtitle('Fraction Wild') +
  ylim(0,1) +
  facet_wrap(~COMMON_POPULATION_NAME) +
  theme(axis.text.x = element_text(angle = 45, vjust = 1, hjust=1), 
   strip.text.x = element_text(size = 6))
data('Salmon-Chinook-Snake-River-spring-summer-run-ESU-ICSRSSchinookSurvey2020')
library(ggplot2)
out$NUMBER_OF_SPAWNERS[out$NUMBER_OF_SPAWNERS==-99] <- NA
ggplot(out, aes(x=YEAR, y=NUMBER_OF_SPAWNERS)) + 
  geom_point(na.rm = TRUE) +
  ggtitle('Salmon-Chinook-Snake-River-spring-summer-run-ESU-ICSRSSchinookSurvey2020') +
  facet_wrap(~COMMON_POPULATION_NAME) +
  theme(axis.text.x = element_text(angle = 45, vjust = 1, hjust=1), 
   strip.text.x = element_text(size = 6))

out$FRACWILD[out$FRACWILD == -99] <- NA
ggplot(out, aes(x=YEAR, y=FRACWILD)) +
  geom_point(na.rm = TRUE) +
  ggtitle('Fraction Wild') +
  ylim(0,1) +
  facet_wrap(~COMMON_POPULATION_NAME) +
  theme(axis.text.x = element_text(angle = 45, vjust = 1, hjust=1), 
   strip.text.x = element_text(size = 6))

Salmon-Chinook-Snake-River-spring-summer-run-ESU-ICSRSSchinookSurveySBT2020

Description

Spawner and fraction wild data. Species: Chinook salmon. Method: Survey. View raw data or Download raw data

Format

A csv file.

SERIES: For certain populations, there are multiple types of spawner count data. For example survey and model counts that are based on different methods. In this case, the 'Series' column gives a name for the dataset to distinguish it from other data sets of the same population.
ESU: ESU or DPS name.
SPECIES: Species name.
METHOD: Method for the spawner count. Survey refers to a spawning ground survey; the count itself is an expansion. See the SPS (database link in sources below) for the details for the data. LadderCount is a weir or dam count. Model refers to the DABOM model that expands from PIT tag data. GSI is an expansion based on the BOXCAR model, which uses GSI to allocate fish sampled at Lower Granite Dam.
MAJOR_POPULATION_GROUP: Major population group within the ESU or DPS.
NMFS_POPID: NWFSC id for the population.
POPULATION_NAME: Long population name.
COMMON_POPULATION_NAME: Shorter population name used in Viability Report figures and tables.
RUN_TIMING: Run timing (fall, winter, spring, etc). If missing, see the ESU/DPS name or may not be applicable for the species.
YEAR: Integer in XXXX format. The year that the count was made. See details for ESU or DPS specific comments.
NUMBER_OF_SPAWNERS: Total spawners or escapement count. -99 means missing count. May be integer or decimal.
FRACWILD: Decimal between 0 and 1. Fraction wild or natural. -99 means missing information.
CONTRIBUTOR: Data contributor. Listed under Source below.
COMPILER: NWFSC staff who compiled the data file: Mari Williams
CITATION: Data citation. Listed under References below.

Source

Shoshone-Bannock Tribe

References

Salmon Population Summaries (SPS) Database: https://www.fisheries.noaa.gov/resource/tool-app/salmon-population-summaries-sps

Original source: Snake River spring/summer Chinook Natural Origin Spawner Abundance Dataset (2008-2018). Spawner abundance data. Shoshone-Bannock Tribes. Excerpted from yearly reports available at https://www.cbfish.org/PiscesPublication.mvc/SearchByTitleDescriptionAuthorOrDate..

Examples

data('Salmon-Chinook-Snake-River-spring-summer-run-ESU-ICSRSSchinookSurveySBT2020')
library(ggplot2)
out$NUMBER_OF_SPAWNERS[out$NUMBER_OF_SPAWNERS==-99] <- NA
ggplot(out, aes(x=YEAR, y=NUMBER_OF_SPAWNERS)) + 
  geom_point(na.rm = TRUE) +
  ggtitle('Salmon-Chinook-Snake-River-spring-summer-run-ESU-ICSRSSchinookSurveySBT2020') +
  facet_wrap(~COMMON_POPULATION_NAME) +
  theme(axis.text.x = element_text(angle = 45, vjust = 1, hjust=1))

out$FRACWILD[out$FRACWILD == -99] <- NA
ggplot(out, aes(x=YEAR, y=FRACWILD)) +
  geom_point(na.rm = TRUE) +
  ggtitle('Fraction Wild') +
  ylim(0,1) +
  facet_wrap(~COMMON_POPULATION_NAME) +
  theme(axis.text.x = element_text(angle = 45, vjust = 1, hjust=1))
data('Salmon-Chinook-Snake-River-spring-summer-run-ESU-ICSRSSchinookSurveySBT2020')
library(ggplot2)
out$NUMBER_OF_SPAWNERS[out$NUMBER_OF_SPAWNERS==-99] <- NA
ggplot(out, aes(x=YEAR, y=NUMBER_OF_SPAWNERS)) + 
  geom_point(na.rm = TRUE) +
  ggtitle('Salmon-Chinook-Snake-River-spring-summer-run-ESU-ICSRSSchinookSurveySBT2020') +
  facet_wrap(~COMMON_POPULATION_NAME) +
  theme(axis.text.x = element_text(angle = 45, vjust = 1, hjust=1))

out$FRACWILD[out$FRACWILD == -99] <- NA
ggplot(out, aes(x=YEAR, y=FRACWILD)) +
  geom_point(na.rm = TRUE) +
  ggtitle('Fraction Wild') +
  ylim(0,1) +
  facet_wrap(~COMMON_POPULATION_NAME) +
  theme(axis.text.x = element_text(angle = 45, vjust = 1, hjust=1))

Salmon-Chinook-Upper-Columbia-River-spring-run-ESU-ICUCchinook2020

Description

Spawner and fraction wild data. Species: Chinook salmon. Method: Survey. View raw data or Download raw data

Format

A csv file.

SERIES: For certain populations, there are multiple types of spawner count data. For example survey and model counts that are based on different methods. In this case, the 'Series' column gives a name for the dataset to distinguish it from other data sets of the same population.
ESU: ESU or DPS name.
SPECIES: Species name.
METHOD: Method for the spawner count. Survey refers to a spawning ground survey; the count itself is an expansion. See the SPS (database link in sources below) for the details for the data. LadderCount is a weir or dam count. Model refers to the DABOM model that expands from PIT tag data. GSI is an expansion based on the BOXCAR model, which uses GSI to allocate fish sampled at Lower Granite Dam.
MAJOR_POPULATION_GROUP: Major population group within the ESU or DPS.
NMFS_POPID: NWFSC id for the population.
POPULATION_NAME: Long population name.
COMMON_POPULATION_NAME: Shorter population name used in Viability Report figures and tables.
RUN_TIMING: Run timing (fall, winter, spring, etc). If missing, see the ESU/DPS name or may not be applicable for the species.
YEAR: Integer in XXXX format. The year that the count was made. See details for ESU or DPS specific comments.
NUMBER_OF_SPAWNERS: Total spawners or escapement count. -99 means missing count. May be integer or decimal.
FRACWILD: Decimal between 0 and 1. Fraction wild or natural. -99 means missing information.
CONTRIBUTOR: Data contributor. Listed under Source below.
COMPILER: NWFSC staff who compiled the data file: Mari Williams
CITATION: Data citation. Listed under References below.

Source

Washington Department of Fish and Wildlife

References

Salmon Population Summaries (SPS) Database: https://www.fisheries.noaa.gov/resource/tool-app/salmon-population-summaries-sps

Original source:

Wenatchee River: Upper Columbia River Chinook Natural Origin Spawner Abundance Dataset (1960-2018). Spawner abundance data. Washington Department of Fish and Wildlife, and Confederated Tribes of the Colville Reservation. Protocol and Methods available at https://fortress.wa.gov/dfw/score/score/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/PSMFC.
Entiat River: Upper Columbia River Chinook Natural Origin Spawner Abundance Dataset (1960-2018). Spawner abundance data. Washington Department of Fish and Wildlife, and Confederated Tribes of the Colville Reservation. Protocol and Methods available at https://fortress.wa.gov/dfw/score/score/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/PSMFC.
Methow River: Upper Columbia River Chinook Natural Origin Spawner Abundance Dataset (1960-2019). Spawner abundance data. Washington Department of Fish and Wildlife, and Confederated Tribes of the Colville Reservation. Protocol and Methods available at https://fortress.wa.gov/dfw/score/score/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/PSMFC.

Examples

data('Salmon-Chinook-Upper-Columbia-River-spring-run-ESU-ICUCchinook2020')
library(ggplot2)
out$NUMBER_OF_SPAWNERS[out$NUMBER_OF_SPAWNERS==-99] <- NA
ggplot(out, aes(x=YEAR, y=NUMBER_OF_SPAWNERS)) + 
  geom_point(na.rm = TRUE) +
  ggtitle('Salmon-Chinook-Upper-Columbia-River-spring-run-ESU-ICUCchinook2020') +
  facet_wrap(~COMMON_POPULATION_NAME) +
  theme(axis.text.x = element_text(angle = 45, vjust = 1, hjust=1))

out$FRACWILD[out$FRACWILD == -99] <- NA
ggplot(out, aes(x=YEAR, y=FRACWILD)) +
  geom_point(na.rm = TRUE) +
  ggtitle('Fraction Wild') +
  ylim(0,1) +
  facet_wrap(~COMMON_POPULATION_NAME) +
  theme(axis.text.x = element_text(angle = 45, vjust = 1, hjust=1))
data('Salmon-Chinook-Upper-Columbia-River-spring-run-ESU-ICUCchinook2020')
library(ggplot2)
out$NUMBER_OF_SPAWNERS[out$NUMBER_OF_SPAWNERS==-99] <- NA
ggplot(out, aes(x=YEAR, y=NUMBER_OF_SPAWNERS)) + 
  geom_point(na.rm = TRUE) +
  ggtitle('Salmon-Chinook-Upper-Columbia-River-spring-run-ESU-ICUCchinook2020') +
  facet_wrap(~COMMON_POPULATION_NAME) +
  theme(axis.text.x = element_text(angle = 45, vjust = 1, hjust=1))

out$FRACWILD[out$FRACWILD == -99] <- NA
ggplot(out, aes(x=YEAR, y=FRACWILD)) +
  geom_point(na.rm = TRUE) +
  ggtitle('Fraction Wild') +
  ylim(0,1) +
  facet_wrap(~COMMON_POPULATION_NAME) +
  theme(axis.text.x = element_text(angle = 45, vjust = 1, hjust=1))

Salmon-Chinook-Upper-Willamette-River-ESU-UWchinook2020

Description

Spawner and fraction wild data. Species: Chinook salmon. Method: . View raw data or Download raw data

Spawner and fraction wild data. Species: chinook.

Clackamas River: Survey. View raw data or Download raw data

Spawner and fraction wild data. Species: Chinook salmon.

Willamette Falls ESC: LadderCount. View raw data or Download raw data

Spawner and fraction wild data. Species: chinook.

North Santiam River: Survey. View raw data or Download raw data

Spawner and fraction wild data. Species: Chinook salmon.

South Santiam River: Survey. View raw data or Download raw data

Spawner and fraction wild data. Species: chinook.

McKenzie River: Survey. View raw data or Download raw data

Spawner and fraction wild data. Species: Chinook salmon.

Middle Fork Willamette River: Survey. View raw data or Download raw data

Format

A csv file.

SERIES: For certain populations, there are multiple types of spawner count data. For example survey and model counts that are based on different methods. In this case, the 'Series' column gives a name for the dataset to distinguish it from other data sets of the same population.
ESU: ESU or DPS name.
SPECIES: Species name.
METHOD: Method for the spawner count. Survey refers to a spawning ground survey; the count itself is an expansion. See the SPS (database link in sources below) for the details for the data. LadderCount is a weir or dam count. Model refers to the DABOM model that expands from PIT tag data. GSI is an expansion based on the BOXCAR model, which uses GSI to allocate fish sampled at Lower Granite Dam.
MAJOR_POPULATION_GROUP: Major population group within the ESU or DPS.
NMFS_POPID: NWFSC id for the population.
POPULATION_NAME: Long population name.
COMMON_POPULATION_NAME: Shorter population name used in Viability Report figures and tables.
RUN_TIMING: Run timing (fall, winter, spring, etc). If missing, see the ESU/DPS name or may not be applicable for the species.
YEAR: Integer in XXXX format. The year that the count was made. See details for ESU or DPS specific comments.
NUMBER_OF_SPAWNERS: Total spawners or escapement count. -99 means missing count. May be integer or decimal.
FRACWILD: Decimal between 0 and 1. Fraction wild or natural. -99 means missing information.
CONTRIBUTOR: Data contributor. Listed under Source below.
COMPILER: NWFSC staff who compiled the data file: Mari Williams
CITATION: Data citation. Listed under References below.

Source

Oregon Department of Fish and Wildlife

References

Salmon Population Summaries (SPS) Database: https://www.fisheries.noaa.gov/resource/tool-app/salmon-population-summaries-sps

Original source:

Clackamas River: Upper Willamette River Chinook Natural Origin Spawner Abundance Dataset (1974-2018). Spawner abundance data. Oregon Department of Fish and Wildlife. Protocol and Methods available at http://odfwrecoverytracker.org/metadata/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/OAI.
Willamette Falls ESC: Upper Willamette River Chinook Natural Origin Spawner Escapement (1946-2019). Ladder count. Personal communication from Jamie Anthony, ODFW, via Mari Williams, NOAAF NWFSC/PSMFC.
North Santiam River: Upper Willamette River Chinook Natural Origin Spawner Abundance Dataset (2007-2018). Spawner abundance data. Oregon Department of Fish and Wildlife. Protocol and Methods available at http://odfwrecoverytracker.org/metadata/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/OAI.
South Santiam River: Upper Willamette River Chinook Natural Origin Spawner Abundance Dataset (2007-2018). Spawner abundance data. Oregon Department of Fish and Wildlife. Protocol and Methods available at http://odfwrecoverytracker.org/metadata/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/OAI.
McKenzie River: Upper Willamette River Chinook Natural Origin Spawner Abundance Dataset (2005-2018). Spawner abundance data. Oregon Department of Fish and Wildlife. Protocol and Methods available at http://odfwrecoverytracker.org/metadata/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/OAI.
Middle Fork Willamette River: Upper Willamette River Chinook Natural Origin Spawner Abundance Dataset (2012-2018). Spawner abundance data. Oregon Department of Fish and Wildlife. Protocol and Methods available at http://odfwrecoverytracker.org/metadata/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/OAI.

Examples

data('Salmon-Chinook-Upper-Willamette-River-ESU-UWchinook2020')
library(ggplot2)
out$NUMBER_OF_SPAWNERS[out$NUMBER_OF_SPAWNERS==-99] <- NA
ggplot(out, aes(x=YEAR, y=NUMBER_OF_SPAWNERS)) + 
  geom_point(na.rm = TRUE) +
  ggtitle('Salmon-Chinook-Upper-Willamette-River-ESU-UWchinook2020') +
  facet_wrap(~COMMON_POPULATION_NAME) +
  theme(axis.text.x = element_text(angle = 45, vjust = 1, hjust=1))

out$FRACWILD[out$FRACWILD == -99] <- NA
ggplot(out, aes(x=YEAR, y=FRACWILD)) +
  geom_point(na.rm = TRUE) +
  ggtitle('Fraction Wild') +
  ylim(0,1) +
  facet_wrap(~COMMON_POPULATION_NAME) +
  theme(axis.text.x = element_text(angle = 45, vjust = 1, hjust=1))
data('Salmon-Chinook-Upper-Willamette-River-ESU-UWchinook2020')
library(ggplot2)
out$NUMBER_OF_SPAWNERS[out$NUMBER_OF_SPAWNERS==-99] <- NA
ggplot(out, aes(x=YEAR, y=NUMBER_OF_SPAWNERS)) + 
  geom_point(na.rm = TRUE) +
  ggtitle('Salmon-Chinook-Upper-Willamette-River-ESU-UWchinook2020') +
  facet_wrap(~COMMON_POPULATION_NAME) +
  theme(axis.text.x = element_text(angle = 45, vjust = 1, hjust=1))

out$FRACWILD[out$FRACWILD == -99] <- NA
ggplot(out, aes(x=YEAR, y=FRACWILD)) +
  geom_point(na.rm = TRUE) +
  ggtitle('Fraction Wild') +
  ylim(0,1) +
  facet_wrap(~COMMON_POPULATION_NAME) +
  theme(axis.text.x = element_text(angle = 45, vjust = 1, hjust=1))

Salmon-chum-Columbia-River-ESU-CRchum2020

Description

Spawner and fraction wild data. Species: Chum salmon. Method: Survey. View raw data or Download raw data

Format

A csv file.

SERIES: For certain populations, there are multiple types of spawner count data. For example survey and model counts that are based on different methods. In this case, the 'Series' column gives a name for the dataset to distinguish it from other data sets of the same population.
ESU: ESU or DPS name.
SPECIES: Species name.
METHOD: Method for the spawner count. Survey refers to a spawning ground survey; the count itself is an expansion. See the SPS (database link in sources below) for the details for the data. LadderCount is a weir or dam count. Model refers to the DABOM model that expands from PIT tag data. GSI is an expansion based on the BOXCAR model, which uses GSI to allocate fish sampled at Lower Granite Dam.
MAJOR_POPULATION_GROUP: Major population group within the ESU or DPS.
NMFS_POPID: NWFSC id for the population.
POPULATION_NAME: Long population name.
COMMON_POPULATION_NAME: Shorter population name used in Viability Report figures and tables.
RUN_TIMING: Run timing (fall, winter, spring, etc). If missing, see the ESU/DPS name or may not be applicable for the species.
YEAR: Integer in XXXX format. The year that the count was made. See details for ESU or DPS specific comments.
NUMBER_OF_SPAWNERS: Total spawners or escapement count. -99 means missing count. May be integer or decimal.
FRACWILD: Decimal between 0 and 1. Fraction wild or natural. -99 means missing information.
CONTRIBUTOR: Data contributor. Listed under Source below.
COMPILER: NWFSC staff who compiled the data file: Mari Williams
CITATION: Data citation. Listed under References below.

Source

Washington Department of Fish and Wildlife

References

Salmon Population Summaries (SPS) Database: https://www.fisheries.noaa.gov/resource/tool-app/salmon-population-summaries-sps

Original source:

Grays/Chinook Fall Chum: Columbia River Chum Natural Origin Spawner Abundance Dataset (2005-2018). Spawner abundance data. Washington Department of Fish and Wildlife. Protocol and Methods available at https://fortress.wa.gov/dfw/score/score/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/PSMFC.
Washougal Fall Chum: Columbia River Chum Natural Origin Spawner Abundance Dataset (2001-2018). Spawner abundance data. Washington Department of Fish and Wildlife. Protocol and Methods available at https://fortress.wa.gov/dfw/score/score/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/PSMFC.
Lower Gorge (Columbia) Fall Chum: Columbia River Chum Natural Origin Spawner Abundance Dataset (2000-2018). Spawner abundance data. Washington Department of Fish and Wildlife. Protocol and Methods available at https://fortress.wa.gov/dfw/score/score/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/PSMFC.
Upper Gorge (Columbia) Fall Chum: Columbia River Chum Natural Origin Spawner Abundance Dataset (1938-2018). Spawner abundance data. Washington Department of Fish and Wildlife. Protocol and Methods available at https://fortress.wa.gov/dfw/score/score/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/PSMFC.

Examples

data('Salmon-chum-Columbia-River-ESU-CRchum2020')
library(ggplot2)
out$NUMBER_OF_SPAWNERS[out$NUMBER_OF_SPAWNERS==-99] <- NA
ggplot(out, aes(x=YEAR, y=NUMBER_OF_SPAWNERS)) + 
  geom_point(na.rm = TRUE) +
  ggtitle('Salmon-chum-Columbia-River-ESU-CRchum2020') +
  facet_wrap(~COMMON_POPULATION_NAME) +
  theme(axis.text.x = element_text(angle = 45, vjust = 1, hjust=1))

out$FRACWILD[out$FRACWILD == -99] <- NA
ggplot(out, aes(x=YEAR, y=FRACWILD)) +
  geom_point(na.rm = TRUE) +
  ggtitle('Fraction Wild') +
  ylim(0,1) +
  facet_wrap(~COMMON_POPULATION_NAME) +
  theme(axis.text.x = element_text(angle = 45, vjust = 1, hjust=1))
data('Salmon-chum-Columbia-River-ESU-CRchum2020')
library(ggplot2)
out$NUMBER_OF_SPAWNERS[out$NUMBER_OF_SPAWNERS==-99] <- NA
ggplot(out, aes(x=YEAR, y=NUMBER_OF_SPAWNERS)) + 
  geom_point(na.rm = TRUE) +
  ggtitle('Salmon-chum-Columbia-River-ESU-CRchum2020') +
  facet_wrap(~COMMON_POPULATION_NAME) +
  theme(axis.text.x = element_text(angle = 45, vjust = 1, hjust=1))

out$FRACWILD[out$FRACWILD == -99] <- NA
ggplot(out, aes(x=YEAR, y=FRACWILD)) +
  geom_point(na.rm = TRUE) +
  ggtitle('Fraction Wild') +
  ylim(0,1) +
  facet_wrap(~COMMON_POPULATION_NAME) +
  theme(axis.text.x = element_text(angle = 45, vjust = 1, hjust=1))

Salmon-coho-Lower-Columbia-River-ESU-LCcoho2020

Description

Spawner and fraction wild data. Species: Coho salmon. Method: Survey. View raw data or Download raw data

Format

A csv file.

SERIES: For certain populations, there are multiple types of spawner count data. For example survey and model counts that are based on different methods. In this case, the 'Series' column gives a name for the dataset to distinguish it from other data sets of the same population.
ESU: ESU or DPS name.
SPECIES: Species name.
METHOD: Method for the spawner count. Survey refers to a spawning ground survey; the count itself is an expansion. See the SPS (database link in sources below) for the details for the data. LadderCount is a weir or dam count. Model refers to the DABOM model that expands from PIT tag data. GSI is an expansion based on the BOXCAR model, which uses GSI to allocate fish sampled at Lower Granite Dam.
MAJOR_POPULATION_GROUP: Major population group within the ESU or DPS.
NMFS_POPID: NWFSC id for the population.
POPULATION_NAME: Long population name.
COMMON_POPULATION_NAME: Shorter population name used in Viability Report figures and tables.
RUN_TIMING: Run timing (fall, winter, spring, etc). If missing, see the ESU/DPS name or may not be applicable for the species.
YEAR: Integer in XXXX format. The year that the count was made. See details for ESU or DPS specific comments.
NUMBER_OF_SPAWNERS: Total spawners or escapement count. -99 means missing count. May be integer or decimal.
FRACWILD: Decimal between 0 and 1. Fraction wild or natural. -99 means missing information.
CONTRIBUTOR: Data contributor. Listed under Source below.
COMPILER: NWFSC staff who compiled the data file: Mari Williams
CITATION: Data citation. Listed under References below.

Source

Grays and Chinook Rivers - late Coho salmon: Washington Department of Fish and Wildlife
Youngs Bay: Oregon Department of Fish and Wildlife
Big Creek: Oregon Department of Fish and Wildlife
Elochoman River - late Coho salmon: Washington Department of Fish and Wildlife
Clatskanie River: Washington Department of Fish and Wildlife
Mill, Abernathy, and Germany Creeks - late Coho salmon: Washington Department of Fish and Wildlife
Scappoose River: Oregon Department of Fish and Wildlife
Lower Cowlitz River - late Coho salmon: Washington Department of Fish and Wildlife
Coweeman River - late Coho salmon: Washington Department of Fish and Wildlife
North Fork Toutle Coho: Washington Department of Fish and Wildlife
South Fork Toutle Coho: Washington Department of Fish and Wildlife
Upper Cowlitz and Cispus Coho: Washington Department of Fish and Wildlife
Tilton Coho: Washington Department of Fish and Wildlife
Kalama River - late Coho salmon: Washington Department of Fish and Wildlife
North Fork Lewis Coho: Washington Department of Fish and Wildlife
East Fork Lewis Coho: Washington Department of Fish and Wildlife
Salmon Creek - late Coho salmon: Washington Department of Fish and Wildlife
Clackamas River: Oregon Department of Fish and Wildlife
Sandy River: Oregon Department of Fish and Wildlife
Washougal River - late Coho salmon: Washington Department of Fish and Wildlife
Upper Gorge (Columbia) Coho: Washington Department of Fish and Wildlife
Hood River: Oregon Department of Fish and Wildlife

References

Salmon Population Summaries (SPS) Database: https://www.fisheries.noaa.gov/resource/tool-app/salmon-population-summaries-sps

Original source:

Grays and Chinook Rivers - late Coho salmon: Columbia River Coho Natural Origin Spawner Abundance Dataset (2010-2018). Spawner abundance data. Washington Department of Fish and Wildlife. Protocol and Methods available at https://fortress.wa.gov/dfw/score/score/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/OAI.
Youngs Bay: Columbia River Coho Natural Origin Spawner Abundance Dataset (2002-2019). Spawner abundance data. Oregon Department of Fish and Wildlife. Protocol and Methods available at http://odfwrecoverytracker.org/metadata/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/PSMFC.
Big Creek: Columbia River Coho Natural Origin Spawner Abundance Dataset (2002-2018). Spawner abundance data. Oregon Department of Fish and Wildlife. Protocol and Methods available at http://odfwrecoverytracker.org/metadata/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/PSMFC.
Elochoman River - late Coho salmon: Columbia River Coho Natural Origin Spawner Abundance Dataset (2010-2018). Spawner abundance data. Washington Department of Fish and Wildlife. Protocol and Methods available at https://fortress.wa.gov/dfw/score/score/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/OAI.
Clatskanie River: Columbia River Coho Natural Origin Spawner Abundance Dataset (2002-2018). Spawner abundance data. Washington Department of Fish and Wildlife. Protocol and Methods available at https://fortress.wa.gov/dfw/score/score/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/OAI.
Mill, Abernathy, and Germany Creeks - late Coho salmon: Columbia River Coho Natural Origin Spawner Abundance Dataset (2010-2018). Spawner abundance data. Washington Department of Fish and Wildlife. Protocol and Methods available at https://fortress.wa.gov/dfw/score/score/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/OAI.
Scappoose River: Columbia River Coho Natural Origin Spawner Abundance Dataset (2002-2018). Spawner abundance data. Oregon Department of Fish and Wildlife. Protocol and Methods available at http://odfwrecoverytracker.org/metadata/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/PSMFC.
Lower Cowlitz River - late Coho salmon: Columbia River Coho Natural Origin Spawner Abundance Dataset (2010-2018). Spawner abundance data. Washington Department of Fish and Wildlife. Protocol and Methods available at https://fortress.wa.gov/dfw/score/score/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/OAI.
Coweeman River - late Coho salmon: Columbia River Coho Natural Origin Spawner Abundance Dataset (2010-2018). Spawner abundance data. Washington Department of Fish and Wildlife. Protocol and Methods available at https://fortress.wa.gov/dfw/score/score/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/OAI.
North Fork Toutle Coho: Columbia River Coho Natural Origin Spawner Abundance Dataset (2010-2018). Spawner abundance data. Washington Department of Fish and Wildlife. Protocol and Methods available at https://fortress.wa.gov/dfw/score/score/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/OAI.
South Fork Toutle Coho: Columbia River Coho Natural Origin Spawner Abundance Dataset (2010-2018). Spawner abundance data. Washington Department of Fish and Wildlife. Protocol and Methods available at https://fortress.wa.gov/dfw/score/score/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/OAI.
Upper Cowlitz and Cispus Coho: Columbia River Coho Natural Origin Spawner Abundance Dataset (1996-2018). Spawner abundance data. Washington Department of Fish and Wildlife. Protocol and Methods available at https://fortress.wa.gov/dfw/score/score/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/OAI.
Tilton Coho: Columbia River Coho Natural Origin Spawner Abundance Dataset (1996-2018). Spawner abundance data. Washington Department of Fish and Wildlife. Protocol and Methods available at https://fortress.wa.gov/dfw/score/score/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/OAI.
Kalama River - late Coho salmon: Columbia River Coho Natural Origin Spawner Abundance Dataset (2010-2018). Spawner abundance data. Washington Department of Fish and Wildlife. Protocol and Methods available at https://fortress.wa.gov/dfw/score/score/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/OAI.
North Fork Lewis Coho: Columbia River Coho Natural Origin Spawner Abundance Dataset (2010-2018). Spawner abundance data. Washington Department of Fish and Wildlife. Protocol and Methods available at https://fortress.wa.gov/dfw/score/score/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/OAI.
East Fork Lewis Coho: Columbia River Coho Natural Origin Spawner Abundance Dataset (2010-2018). Spawner abundance data. Washington Department of Fish and Wildlife. Protocol and Methods available at https://fortress.wa.gov/dfw/score/score/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/OAI.
Salmon Creek - late Coho salmon: Columbia River Coho Natural Origin Spawner Abundance Dataset (2010-2018). Spawner abundance data. Washington Department of Fish and Wildlife. Protocol and Methods available at https://fortress.wa.gov/dfw/score/score/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/OAI.
Clackamas River: Columbia River Coho Natural Origin Spawner Abundance Dataset (1974-2018). Spawner abundance data. Oregon Department of Fish and Wildlife. Protocol and Methods available at http://odfwrecoverytracker.org/metadata/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/PSMFC.
Sandy River: Columbia River Coho Natural Origin Spawner Abundance Dataset (2007-2018). Spawner abundance data. Oregon Department of Fish and Wildlife. Protocol and Methods available at http://odfwrecoverytracker.org/metadata/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/PSMFC.
Washougal River - late Coho salmon: Columbia River Coho Natural Origin Spawner Abundance Dataset (2010-2018). Spawner abundance data. Washington Department of Fish and Wildlife. Protocol and Methods available at https://fortress.wa.gov/dfw/score/score/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/OAI.
Upper Gorge (Columbia) Coho: Columbia River Coho Natural Origin Spawner Abundance Dataset (2007-2018). Spawner abundance data. Washington Department of Fish and Wildlife. Protocol and Methods available at https://fortress.wa.gov/dfw/score/score/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/OAI.
Hood River: Columbia River Coho Natural Origin Spawner Abundance Dataset (2002-2018). Spawner abundance data. Oregon Department of Fish and Wildlife. Protocol and Methods available at http://odfwrecoverytracker.org/metadata/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/PSMFC.

Examples

data('Salmon-coho-Lower-Columbia-River-ESU-LCcoho2020')
library(ggplot2)
out$NUMBER_OF_SPAWNERS[out$NUMBER_OF_SPAWNERS==-99] <- NA
ggplot(out, aes(x=YEAR, y=NUMBER_OF_SPAWNERS)) + 
  geom_point(na.rm = TRUE) +
  ggtitle('Salmon-coho-Lower-Columbia-River-ESU-LCcoho2020') +
  facet_wrap(~COMMON_POPULATION_NAME) +
  theme(axis.text.x = element_text(angle = 45, vjust = 1, hjust=1), 
   strip.text.x = element_text(size = 6))

out$FRACWILD[out$FRACWILD == -99] <- NA
ggplot(out, aes(x=YEAR, y=FRACWILD)) +
  geom_point(na.rm = TRUE) +
  ggtitle('Fraction Wild') +
  ylim(0,1) +
  facet_wrap(~COMMON_POPULATION_NAME) +
  theme(axis.text.x = element_text(angle = 45, vjust = 1, hjust=1), 
   strip.text.x = element_text(size = 6))
data('Salmon-coho-Lower-Columbia-River-ESU-LCcoho2020')
library(ggplot2)
out$NUMBER_OF_SPAWNERS[out$NUMBER_OF_SPAWNERS==-99] <- NA
ggplot(out, aes(x=YEAR, y=NUMBER_OF_SPAWNERS)) + 
  geom_point(na.rm = TRUE) +
  ggtitle('Salmon-coho-Lower-Columbia-River-ESU-LCcoho2020') +
  facet_wrap(~COMMON_POPULATION_NAME) +
  theme(axis.text.x = element_text(angle = 45, vjust = 1, hjust=1), 
   strip.text.x = element_text(size = 6))

out$FRACWILD[out$FRACWILD == -99] <- NA
ggplot(out, aes(x=YEAR, y=FRACWILD)) +
  geom_point(na.rm = TRUE) +
  ggtitle('Fraction Wild') +
  ylim(0,1) +
  facet_wrap(~COMMON_POPULATION_NAME) +
  theme(axis.text.x = element_text(angle = 45, vjust = 1, hjust=1), 
   strip.text.x = element_text(size = 6))

Salmon-coho-Oregon-Coast-ESU-OCcoho2020

Description

Spawner and fraction wild data. Species: Coho salmon. Method: Survey. View raw data or Download raw data

Format

A csv file.

SERIES: For certain populations, there are multiple types of spawner count data. For example survey and model counts that are based on different methods. In this case, the 'Series' column gives a name for the dataset to distinguish it from other data sets of the same population.
ESU: ESU or DPS name.
SPECIES: Species name.
METHOD: Method for the spawner count. Survey refers to a spawning ground survey; the count itself is an expansion. See the SPS (database link in sources below) for the details for the data. LadderCount is a weir or dam count. Model refers to the DABOM model that expands from PIT tag data. GSI is an expansion based on the BOXCAR model, which uses GSI to allocate fish sampled at Lower Granite Dam.
MAJOR_POPULATION_GROUP: Major population group within the ESU or DPS.
NMFS_POPID: NWFSC id for the population.
POPULATION_NAME: Long population name.
COMMON_POPULATION_NAME: Shorter population name used in Viability Report figures and tables.
RUN_TIMING: Run timing (fall, winter, spring, etc). If missing, see the ESU/DPS name or may not be applicable for the species.
YEAR: Integer in XXXX format. The year that the count was made. See details for ESU or DPS specific comments.
NUMBER_OF_SPAWNERS: Total spawners or escapement count. -99 means missing count. May be integer or decimal.
FRACWILD: Decimal between 0 and 1. Fraction wild or natural. -99 means missing information.
CONTRIBUTOR: Data contributor. Listed under Source below.
COMPILER: NWFSC staff who compiled the data file: Mari Williams
CITATION: Data citation. Listed under References below.

Source

Oregon Department of Fish and Wildlife

References

Salmon Population Summaries (SPS) Database: https://www.fisheries.noaa.gov/resource/tool-app/salmon-population-summaries-sps

Original source:

Alsea River: Oregon Coast Coho Natural Origin Spawner Abundance Dataset (1994-2018). Spawner abundance data. Oregon Department of Fish and Wildlife. Protocol and Methods available at http://odfwrecoverytracker.org/metadata/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/OAI.
Beaver Creek: Oregon Coast Coho Natural Origin Spawner Abundance Dataset (1994-2018). Spawner abundance data. Oregon Department of Fish and Wildlife. Protocol and Methods available at http://odfwrecoverytracker.org/metadata/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/OAI.
Coos Bay: Oregon Coast Coho Natural Origin Spawner Abundance Dataset (1994-2018). Spawner abundance data. Oregon Department of Fish and Wildlife. Protocol and Methods available at http://odfwrecoverytracker.org/metadata/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/OAI.
Coquille River: Oregon Coast Coho Natural Origin Spawner Abundance Dataset (1994-2018). Spawner abundance data. Oregon Department of Fish and Wildlife. Protocol and Methods available at http://odfwrecoverytracker.org/metadata/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/OAI.
Floras Creek: Oregon Coast Coho Natural Origin Spawner Abundance Dataset (1994-2018). Spawner abundance data. Oregon Department of Fish and Wildlife. Protocol and Methods available at http://odfwrecoverytracker.org/metadata/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/OAI.
Lower Umpqua: Oregon Coast Coho Natural Origin Spawner Abundance Dataset (1994-2018). Spawner abundance data. Oregon Department of Fish and Wildlife. Protocol and Methods available at http://odfwrecoverytracker.org/metadata/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/OAI.
Middle Umpqua: Oregon Coast Coho Natural Origin Spawner Abundance Dataset (1994-2018). Spawner abundance data. Oregon Department of Fish and Wildlife. Protocol and Methods available at http://odfwrecoverytracker.org/metadata/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/OAI.
Necanicum River: Oregon Coast Coho Natural Origin Spawner Abundance Dataset (1994-2018). Spawner abundance data. Oregon Department of Fish and Wildlife. Protocol and Methods available at http://odfwrecoverytracker.org/metadata/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/OAI.
Nehalem River: Oregon Coast Coho Natural Origin Spawner Abundance Dataset (1994-2018). Spawner abundance data. Oregon Department of Fish and Wildlife. Protocol and Methods available at http://odfwrecoverytracker.org/metadata/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/OAI.
Nestucca River: Oregon Coast Coho Natural Origin Spawner Abundance Dataset (1994-2018). Spawner abundance data. Oregon Department of Fish and Wildlife. Protocol and Methods available at http://odfwrecoverytracker.org/metadata/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/OAI.
North Umpqua: Oregon Coast Coho Natural Origin Spawner Abundance Dataset (1994-2018). Spawner abundance data. Oregon Department of Fish and Wildlife. Protocol and Methods available at http://odfwrecoverytracker.org/metadata/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/OAI.
Salmon River: Oregon Coast Coho Natural Origin Spawner Abundance Dataset (1994-2018). Spawner abundance data. Oregon Department of Fish and Wildlife. Protocol and Methods available at http://odfwrecoverytracker.org/metadata/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/OAI.
Siletz River: Oregon Coast Coho Natural Origin Spawner Abundance Dataset (1994-2018). Spawner abundance data. Oregon Department of Fish and Wildlife. Protocol and Methods available at http://odfwrecoverytracker.org/metadata/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/OAI.
Siltcoos River (Lake): Oregon Coast Coho Natural Origin Spawner Abundance Dataset (1994-2018). Spawner abundance data. Oregon Department of Fish and Wildlife. Protocol and Methods available at http://odfwrecoverytracker.org/metadata/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/OAI.
Siuslaw River: Oregon Coast Coho Natural Origin Spawner Abundance Dataset (1994-2018). Spawner abundance data. Oregon Department of Fish and Wildlife. Protocol and Methods available at http://odfwrecoverytracker.org/metadata/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/OAI.
Sixes River: Oregon Coast Coho Natural Origin Spawner Abundance Dataset (1994-2018). Spawner abundance data. Oregon Department of Fish and Wildlife. Protocol and Methods available at http://odfwrecoverytracker.org/metadata/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/OAI.
South Umpqua: Oregon Coast Coho Natural Origin Spawner Abundance Dataset (1994-2018). Spawner abundance data. Oregon Department of Fish and Wildlife. Protocol and Methods available at http://odfwrecoverytracker.org/metadata/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/OAI.
Tahkenitch Lake: Oregon Coast Coho Natural Origin Spawner Abundance Dataset (1994-2018). Spawner abundance data. Oregon Department of Fish and Wildlife. Protocol and Methods available at http://odfwrecoverytracker.org/metadata/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/OAI.
Tenmile Lake: Oregon Coast Coho Natural Origin Spawner Abundance Dataset (1994-2018). Spawner abundance data. Oregon Department of Fish and Wildlife. Protocol and Methods available at http://odfwrecoverytracker.org/metadata/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/OAI.
Tillamook Bay: Oregon Coast Coho Natural Origin Spawner Abundance Dataset (1994-2018). Spawner abundance data. Oregon Department of Fish and Wildlife. Protocol and Methods available at http://odfwrecoverytracker.org/metadata/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/OAI.
Yaquina River: Oregon Coast Coho Natural Origin Spawner Abundance Dataset (1994-2018). Spawner abundance data. Oregon Department of Fish and Wildlife. Protocol and Methods available at http://odfwrecoverytracker.org/metadata/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/OAI.
Oregon Mid-Coast Coho dependent population group: Oregon Coast Coho Natural Origin Spawner Abundance Dataset (2007-2018). Spawner abundance data. Oregon Department of Fish and Wildlife. Protocol and Methods available at http://odfwrecoverytracker.org/metadata/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/OAI.
Oregon North Coast Coho dependent population group: Oregon Coast Coho Natural Origin Spawner Abundance Dataset (2007-2018). Spawner abundance data. Oregon Department of Fish and Wildlife. Protocol and Methods available at http://odfwrecoverytracker.org/metadata/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/OAI.
Oregon Mid-South Coast Coho dependent population group: Oregon Coast Coho Natural Origin Spawner Abundance Dataset (2010-2018). Spawner abundance data. Oregon Department of Fish and Wildlife. Protocol and Methods available at http://odfwrecoverytracker.org/metadata/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/OAI.

Examples

data('Salmon-coho-Oregon-Coast-ESU-OCcoho2020')
library(ggplot2)
out$NUMBER_OF_SPAWNERS[out$NUMBER_OF_SPAWNERS==-99] <- NA
ggplot(out, aes(x=YEAR, y=NUMBER_OF_SPAWNERS)) + 
  geom_point(na.rm = TRUE) +
  ggtitle('Salmon-coho-Oregon-Coast-ESU-OCcoho2020') +
  facet_wrap(~COMMON_POPULATION_NAME) +
  theme(axis.text.x = element_text(angle = 45, vjust = 1, hjust=1), 
   strip.text.x = element_text(size = 6))

out$FRACWILD[out$FRACWILD == -99] <- NA
ggplot(out, aes(x=YEAR, y=FRACWILD)) +
  geom_point(na.rm = TRUE) +
  ggtitle('Fraction Wild') +
  ylim(0,1) +
  facet_wrap(~COMMON_POPULATION_NAME) +
  theme(axis.text.x = element_text(angle = 45, vjust = 1, hjust=1), 
   strip.text.x = element_text(size = 6))
data('Salmon-coho-Oregon-Coast-ESU-OCcoho2020')
library(ggplot2)
out$NUMBER_OF_SPAWNERS[out$NUMBER_OF_SPAWNERS==-99] <- NA
ggplot(out, aes(x=YEAR, y=NUMBER_OF_SPAWNERS)) + 
  geom_point(na.rm = TRUE) +
  ggtitle('Salmon-coho-Oregon-Coast-ESU-OCcoho2020') +
  facet_wrap(~COMMON_POPULATION_NAME) +
  theme(axis.text.x = element_text(angle = 45, vjust = 1, hjust=1), 
   strip.text.x = element_text(size = 6))

out$FRACWILD[out$FRACWILD == -99] <- NA
ggplot(out, aes(x=YEAR, y=FRACWILD)) +
  geom_point(na.rm = TRUE) +
  ggtitle('Fraction Wild') +
  ylim(0,1) +
  facet_wrap(~COMMON_POPULATION_NAME) +
  theme(axis.text.x = element_text(angle = 45, vjust = 1, hjust=1), 
   strip.text.x = element_text(size = 6))

Steelhead-Lower-Columbia-River-DPS-LCsthd2020

Description

Spawner and fraction wild data. Species: Steelhead. Method: Survey. View raw data or Download raw data

Format

A csv file.

SERIES: For certain populations, there are multiple types of spawner count data. For example survey and model counts that are based on different methods. In this case, the 'Series' column gives a name for the dataset to distinguish it from other data sets of the same population.
ESU: ESU or DPS name.
SPECIES: Species name.
METHOD: Method for the spawner count. Survey refers to a spawning ground survey; the count itself is an expansion. See the SPS (database link in sources below) for the details for the data. LadderCount is a weir or dam count. Model refers to the DABOM model that expands from PIT tag data. GSI is an expansion based on the BOXCAR model, which uses GSI to allocate fish sampled at Lower Granite Dam.
MAJOR_POPULATION_GROUP: Major population group within the ESU or DPS.
NMFS_POPID: NWFSC id for the population.
POPULATION_NAME: Long population name.
COMMON_POPULATION_NAME: Shorter population name used in Viability Report figures and tables.
RUN_TIMING: Run timing (fall, winter, spring, etc). If missing, see the ESU/DPS name or may not be applicable for the species.
YEAR: Integer in XXXX format. The year that the count was made. See details for ESU or DPS specific comments.
NUMBER_OF_SPAWNERS: Total spawners or escapement count. -99 means missing count. May be integer or decimal.
FRACWILD: Decimal between 0 and 1. Fraction wild or natural. -99 means missing information.
CONTRIBUTOR: Data contributor. Listed under Source below.
COMPILER: NWFSC staff who compiled the data file: Mari Williams
CITATION: Data citation. Listed under References below.

Source

Coweeman Winter Steelhead: Washington Department of Fish and Wildlife
North Fork Toutle Winter Steelhead: Washington Department of Fish and Wildlife
South Fork Toutle Winter Steelhead: Washington Department of Fish and Wildlife
Upper Cowlitz and Cispus Winter Steelhead: Washington Department of Fish and Wildlife
Tilton Winter Steelhead: Washington Department of Fish and Wildlife
Kalama Winter Steelhead: Washington Department of Fish and Wildlife
East Fork Lewis Winter Steelhead: Washington Department of Fish and Wildlife
Clackamas River: Oregon Department of Fish and Wildlife
Sandy River: Oregon Department of Fish and Wildlife
Washougal Winter Steelhead: Washington Department of Fish and Wildlife
Upper Gorge (Columbia) Winter Steelhead: Washington Department of Fish and Wildlife
Hood River: Oregon Department of Fish and Wildlife
Kalama Summer Steelhead: Washington Department of Fish and Wildlife
East Fork Lewis Summer Steelhead: Washington Department of Fish and Wildlife
Washougal Summer Steelhead: Washington Department of Fish and Wildlife
Wind River (Upper Gorge) Summer Steelhead: Washington Department of Fish and Wildlife

References

Salmon Population Summaries (SPS) Database: https://www.fisheries.noaa.gov/resource/tool-app/salmon-population-summaries-sps

Original source:

Coweeman Winter Steelhead: Lower Columbia River Steelhead Natural Origin Spawner Abundance Dataset (1987-2019). Spawner abundance data. Washington Department of Fish and Wildlife. Protocol and Methods available at https://fortress.wa.gov/dfw/score/score/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/PSMFC.
North Fork Toutle Winter Steelhead: Lower Columbia River Steelhead Natural Origin Spawner Abundance Dataset (2005-2019). Spawner abundance data. Washington Department of Fish and Wildlife. Protocol and Methods available at https://fortress.wa.gov/dfw/score/score/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/PSMFC.
South Fork Toutle Winter Steelhead: Lower Columbia River Steelhead Natural Origin Spawner Abundance Dataset (1981-2019). Spawner abundance data. Washington Department of Fish and Wildlife. Protocol and Methods available at https://fortress.wa.gov/dfw/score/score/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/PSMFC.
Upper Cowlitz and Cispus Winter Steelhead: Lower Columbia River Steelhead Natural Origin Spawner Abundance Dataset (1997-2018). Spawner abundance data. Washington Department of Fish and Wildlife. Protocol and Methods available at https://fortress.wa.gov/dfw/score/score/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/PSMFC.
Tilton Winter Steelhead: Lower Columbia River Steelhead Natural Origin Spawner Abundance Dataset (1999-2018). Spawner abundance data. Washington Department of Fish and Wildlife. Protocol and Methods available at https://fortress.wa.gov/dfw/score/score/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/PSMFC.
Kalama Winter Steelhead: Lower Columbia River Steelhead Natural Origin Spawner Abundance Dataset (1977-2019). Spawner abundance data. Washington Department of Fish and Wildlife. Protocol and Methods available at https://fortress.wa.gov/dfw/score/score/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/PSMFC.
East Fork Lewis Winter Steelhead: Lower Columbia River Steelhead Natural Origin Spawner Abundance Dataset (1986-2019). Spawner abundance data. Washington Department of Fish and Wildlife. Protocol and Methods available at https://fortress.wa.gov/dfw/score/score/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/PSMFC.
Clackamas River: Lower Columbia River Steelhead Natural Origin Spawner Abundance Dataset (1974-2019). Spawner abundance data. Oregon Department of Fish and Wildlife. Protocol and Methods available at http://odfwrecoverytracker.org/metadata/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/PSMFC.
Sandy River: Lower Columbia River Steelhead Natural Origin Spawner Abundance Dataset (2010-2019). Spawner abundance data. Oregon Department of Fish and Wildlife. Protocol and Methods available at http://odfwrecoverytracker.org/metadata/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/PSMFC.
Washougal Winter Steelhead: Lower Columbia River Steelhead Natural Origin Spawner Abundance Dataset (1991-2019). Spawner abundance data. Washington Department of Fish and Wildlife. Protocol and Methods available at https://fortress.wa.gov/dfw/score/score/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/PSMFC.
Upper Gorge (Columbia) Winter Steelhead: Lower Columbia River Steelhead Natural Origin Spawner Abundance Dataset (2000-2019). Spawner abundance data. Washington Department of Fish and Wildlife. Protocol and Methods available at https://fortress.wa.gov/dfw/score/score/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/PSMFC.
Hood River: Lower Columbia River Steelhead Natural Origin Spawner Abundance Dataset (2011-2018). Spawner abundance data. Oregon Department of Fish and Wildlife. Protocol and Methods available at http://odfwrecoverytracker.org/metadata/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/PSMFC.
Kalama Summer Steelhead: Lower Columbia River Steelhead Natural Origin Spawner Abundance Dataset (1977-2019). Spawner abundance data. Washington Department of Fish and Wildlife. Protocol and Methods available at https://fortress.wa.gov/dfw/score/score/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/PSMFC.
East Fork Lewis Summer Steelhead: Lower Columbia River Steelhead Natural Origin Spawner Abundance Dataset (1996-2019). Spawner abundance data. Washington Department of Fish and Wildlife. Protocol and Methods available at https://fortress.wa.gov/dfw/score/score/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/PSMFC.
Washougal Summer Steelhead: Lower Columbia River Steelhead Natural Origin Spawner Abundance Dataset (1953-2019). Spawner abundance data. Washington Department of Fish and Wildlife. Protocol and Methods available at https://fortress.wa.gov/dfw/score/score/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/PSMFC.
Wind River (Upper Gorge) Summer Steelhead: Lower Columbia River Steelhead Natural Origin Spawner Abundance Dataset (1989-2019). Spawner abundance data. Washington Department of Fish and Wildlife. Protocol and Methods available at https://fortress.wa.gov/dfw/score/score/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/PSMFC.

Examples

data('Steelhead-Lower-Columbia-River-DPS-LCsthd2020')
library(ggplot2)
out$NUMBER_OF_SPAWNERS[out$NUMBER_OF_SPAWNERS==-99] <- NA
ggplot(out, aes(x=YEAR, y=NUMBER_OF_SPAWNERS)) + 
  geom_point(na.rm = TRUE) +
  ggtitle('Steelhead-Lower-Columbia-River-DPS-LCsthd2020') +
  facet_wrap(~COMMON_POPULATION_NAME) +
  theme(axis.text.x = element_text(angle = 45, vjust = 1, hjust=1), 
   strip.text.x = element_text(size = 6))

out$FRACWILD[out$FRACWILD == -99] <- NA
ggplot(out, aes(x=YEAR, y=FRACWILD)) +
  geom_point(na.rm = TRUE) +
  ggtitle('Fraction Wild') +
  ylim(0,1) +
  facet_wrap(~COMMON_POPULATION_NAME) +
  theme(axis.text.x = element_text(angle = 45, vjust = 1, hjust=1), 
   strip.text.x = element_text(size = 6))
data('Steelhead-Lower-Columbia-River-DPS-LCsthd2020')
library(ggplot2)
out$NUMBER_OF_SPAWNERS[out$NUMBER_OF_SPAWNERS==-99] <- NA
ggplot(out, aes(x=YEAR, y=NUMBER_OF_SPAWNERS)) + 
  geom_point(na.rm = TRUE) +
  ggtitle('Steelhead-Lower-Columbia-River-DPS-LCsthd2020') +
  facet_wrap(~COMMON_POPULATION_NAME) +
  theme(axis.text.x = element_text(angle = 45, vjust = 1, hjust=1), 
   strip.text.x = element_text(size = 6))

out$FRACWILD[out$FRACWILD == -99] <- NA
ggplot(out, aes(x=YEAR, y=FRACWILD)) +
  geom_point(na.rm = TRUE) +
  ggtitle('Fraction Wild') +
  ylim(0,1) +
  facet_wrap(~COMMON_POPULATION_NAME) +
  theme(axis.text.x = element_text(angle = 45, vjust = 1, hjust=1), 
   strip.text.x = element_text(size = 6))

Steelhead-Middle-Columbia-River-DPS-ICMC2021

Description

Spawner and fraction wild data. Species: Steelhead. Method: Survey. View raw data or Download raw data

Format

A csv file.

SERIES: For certain populations, there are multiple types of spawner count data. For example survey and model counts that are based on different methods. In this case, the 'Series' column gives a name for the dataset to distinguish it from other data sets of the same population.
ESU: ESU or DPS name.
SPECIES: Species name.
METHOD: Method for the spawner count. Survey refers to a spawning ground survey; the count itself is an expansion. See the SPS (database link in sources below) for the details for the data. LadderCount is a weir or dam count. Model refers to the DABOM model that expands from PIT tag data. GSI is an expansion based on the BOXCAR model, which uses GSI to allocate fish sampled at Lower Granite Dam.
MAJOR_POPULATION_GROUP: Major population group within the ESU or DPS.
NMFS_POPID: NWFSC id for the population.
POPULATION_NAME: Long population name.
COMMON_POPULATION_NAME: Shorter population name used in Viability Report figures and tables.
RUN_TIMING: Run timing (fall, winter, spring, etc). If missing, see the ESU/DPS name or may not be applicable for the species.
YEAR: Integer in XXXX format. The year that the count was made. See details for ESU or DPS specific comments.
NUMBER_OF_SPAWNERS: Total spawners or escapement count. -99 means missing count. May be integer or decimal.
FRACWILD: Decimal between 0 and 1. Fraction wild or natural. -99 means missing information.
CONTRIBUTOR: Data contributor. Listed under Source below.
COMPILER: NWFSC staff who compiled the data file: Mari Williams
CITATION: Data citation. Listed under References below.

Source

Klickitat River: Yakama Nation Fisheries
Fifteenmile Creek: Oregon Department of Fish and Wildlife
Deschutes River Westside: Oregon Department of Fish and Wildlife
Deschutes River Eastside: Oregon Department of Fish and Wildlife
Rock Creek: Yakama Nation Fisheries
John Day River Lower Mainstem Tributaries: Oregon Department of Fish and Wildlife
North Fork John Day River: Oregon Department of Fish and Wildlife
Middle Fork John Day River: Oregon Department of Fish and Wildlife
South Fork John Day River: Oregon Department of Fish and Wildlife
John Day River Upper Mainstem: Oregon Department of Fish and Wildlife
Satus Creek: Yakama Nation Fisheries
Toppenish Creek: Yakama Nation Fisheries
Naches River: Yakama Nation Fisheries
Yakima River upper mainstem: Yakama Nation Fisheries
Umatilla River: Oregon Department of Fish and Wildlife
Walla Walla River: Oregon Department of Fish and Wildlife
Touchet River: Washington Department of Fish and Wildlife

References

Salmon Population Summaries (SPS) Database: https://www.fisheries.noaa.gov/resource/tool-app/salmon-population-summaries-sps

Original source:

Klickitat River: Middle Columbia River Steelhead Natural Origin Spawner Abundance Dataset (2006-2019). Spawner abundance data. Confederated Tribes and Bands of the Yakama Nation. Protocol and Methods available at https://www.cbfish.org/Document.mvc/Viewer/P148516 and https://www.cbfish.org/Document.mvc/Viewer/P160751. Accessed from www.cax.streamnet.org vers July 1, 2020 10:00PM by Mari Williams, NOAAF NWFSC/OAI.
Fifteenmile Creek: Middle Columbia River Steelhead Natural Origin Spawner Abundance Dataset (1985-2018). Spawner abundance data. Oregon Department of Fish and Wildlife. Protocol and Methods available at http://odfwrecoverytracker.org/metadata/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/OAI.
Deschutes River Westside: Middle Columbia River Steelhead Natural Origin Spawner Abundance Dataset (1978-2018). Spawner abundance data. Oregon Department of Fish and Wildlife. Protocol and Methods available at http://odfwrecoverytracker.org/metadata/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/OAI.
Deschutes River Eastside: Middle Columbia River Steelhead Natural Origin Spawner Abundance Dataset (1990-2018). Spawner abundance data. Oregon Department of Fish and Wildlife. Protocol and Methods available at http://odfwrecoverytracker.org/metadata/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/OAI.
Rock Creek: Middle Columbia River Steelhead Natural Origin Spawner Abundance Dataset (2008-2018). Spawner abundance data. Confederated Tribes and Bands of the Yakama Nation. Protocol and Methods available at https://www.cbfish.org/Document.mvc/Viewer/P148516 and https://www.cbfish.org/Document.mvc/Viewer/P160751. Accessed from www.cax.streamnet.org vers July 1, 2020 10:00PM by Mari Williams, NOAAF NWFSC/OAI.
John Day River Lower Mainstem Tributaries: Middle Columbia River Steelhead Natural Origin Spawner Abundance Dataset (1959-2019). Spawner abundance data. Oregon Department of Fish and Wildlife. Protocol and Methods available at http://odfwrecoverytracker.org/metadata/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/OAI.
North Fork John Day River: Middle Columbia River Steelhead Natural Origin Spawner Abundance Dataset (1963-2018). Spawner abundance data. Oregon Department of Fish and Wildlife. Protocol and Methods available at http://odfwrecoverytracker.org/metadata/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/OAI.
Middle Fork John Day River: Middle Columbia River Steelhead Natural Origin Spawner Abundance Dataset (1964-2019). Spawner abundance data. Oregon Department of Fish and Wildlife. Protocol and Methods available at http://odfwrecoverytracker.org/metadata/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/OAI.
South Fork John Day River: Middle Columbia River Steelhead Natural Origin Spawner Abundance Dataset (1960-2019). Spawner abundance data. Oregon Department of Fish and Wildlife. Protocol and Methods available at http://odfwrecoverytracker.org/metadata/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/OAI.
John Day River Upper Mainstem: Middle Columbia River Steelhead Natural Origin Spawner Abundance Dataset (1959-2018). Spawner abundance data. Oregon Department of Fish and Wildlife. Protocol and Methods available at http://odfwrecoverytracker.org/metadata/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/OAI.
Satus Creek: Middle Columbia River Steelhead Natural Origin Spawner Abundance Dataset (1984-2018). Spawner abundance data. Confederated Tribes and Bands of the Yakama Nation. Protocol and Methods available at https://www.cbfish.org/Document.mvc/Viewer/P153378. Accessed from www.cax.streamnet.org vers July 1 2020 10:00PM by Mari Williams, NOAAF NWFSC/OAI.
Toppenish Creek: Middle Columbia River Steelhead Natural Origin Spawner Abundance Dataset (1984-2018). Spawner abundance data. Confederated Tribes and Bands of the Yakama Nation. Protocol and Methods available at https://www.cbfish.org/Document.mvc/Viewer/P153378. Accessed from www.cax.streamnet.org vers July 1 2020 10:00PM by Mari Williams, NOAAF NWFSC/OAI.
Naches River: Middle Columbia River Steelhead Natural Origin Spawner Abundance Dataset (1984-2018). Spawner abundance data. Confederated Tribes and Bands of the Yakama Nation. Protocol and Methods available at https://www.cbfish.org/Document.mvc/Viewer/P153378. Accessed from www.cax.streamnet.org vers July 1 2020 10:00PM by Mari Williams, NOAAF NWFSC/OAI.
Yakima River upper mainstem: Middle Columbia River Steelhead Natural Origin Spawner Abundance Dataset (1984-2018). Spawner abundance data. Confederated Tribes and Bands of the Yakama Nation. Protocol and Methods available at https://www.cbfish.org/Document.mvc/Viewer/P153378. Accessed from www.cax.streamnet.org vers July 1 2020 10:00PM by Mari Williams, NOAAF NWFSC/OAI.
Umatilla River: Middle Columbia River Steelhead Natural Origin Spawner Abundance Dataset (1967-2018). Spawner abundance data. Oregon Department of Fish and Wildlife. Protocol and Methods available at http://odfwrecoverytracker.org/metadata/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/OAI.
Walla Walla River: Middle Columbia River Steelhead Natural Origin Spawner Abundance Dataset (1993-2019). Spawner abundance data. Oregon Department of Fish and Wildlife. Protocol and Methods available at http://odfwrecoverytracker.org/metadata/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/OAI.
Touchet River: Middle Columbia River Steelhead Natural Origin Spawner Abundance Dataset (1993-2019). Spawner abundance data. Washington Department of Fish and Wildlife. Protocol and Methods available at https://fortress.wa.gov/dfw/score/score/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/OAI.

Examples

data('Steelhead-Middle-Columbia-River-DPS-ICMC2021')
library(ggplot2)
out$NUMBER_OF_SPAWNERS[out$NUMBER_OF_SPAWNERS==-99] <- NA
ggplot(out, aes(x=YEAR, y=NUMBER_OF_SPAWNERS)) + 
  geom_point(na.rm = TRUE) +
  ggtitle('Steelhead-Middle-Columbia-River-DPS-ICMC2021') +
  facet_wrap(~COMMON_POPULATION_NAME) +
  theme(axis.text.x = element_text(angle = 45, vjust = 1, hjust=1), 
   strip.text.x = element_text(size = 6))

out$FRACWILD[out$FRACWILD == -99] <- NA
ggplot(out, aes(x=YEAR, y=FRACWILD)) +
  geom_point(na.rm = TRUE) +
  ggtitle('Fraction Wild') +
  ylim(0,1) +
  facet_wrap(~COMMON_POPULATION_NAME) +
  theme(axis.text.x = element_text(angle = 45, vjust = 1, hjust=1), 
   strip.text.x = element_text(size = 6))
data('Steelhead-Middle-Columbia-River-DPS-ICMC2021')
library(ggplot2)
out$NUMBER_OF_SPAWNERS[out$NUMBER_OF_SPAWNERS==-99] <- NA
ggplot(out, aes(x=YEAR, y=NUMBER_OF_SPAWNERS)) + 
  geom_point(na.rm = TRUE) +
  ggtitle('Steelhead-Middle-Columbia-River-DPS-ICMC2021') +
  facet_wrap(~COMMON_POPULATION_NAME) +
  theme(axis.text.x = element_text(angle = 45, vjust = 1, hjust=1), 
   strip.text.x = element_text(size = 6))

out$FRACWILD[out$FRACWILD == -99] <- NA
ggplot(out, aes(x=YEAR, y=FRACWILD)) +
  geom_point(na.rm = TRUE) +
  ggtitle('Fraction Wild') +
  ylim(0,1) +
  facet_wrap(~COMMON_POPULATION_NAME) +
  theme(axis.text.x = element_text(angle = 45, vjust = 1, hjust=1), 
   strip.text.x = element_text(size = 6))

Steelhead-Puget-Sound-DPS-PSsteelhead2020

Description

Spawner and fraction wild data. Species: Steelhead. Method: Survey. View raw data or Download raw data

Format

A csv file.

SERIES: For certain populations, there are multiple types of spawner count data. For example survey and model counts that are based on different methods. In this case, the 'Series' column gives a name for the dataset to distinguish it from other data sets of the same population.
ESU: ESU or DPS name.
SPECIES: Species name.
METHOD: Method for the spawner count. Survey refers to a spawning ground survey; the count itself is an expansion. See the SPS (database link in sources below) for the details for the data. LadderCount is a weir or dam count. Model refers to the DABOM model that expands from PIT tag data. GSI is an expansion based on the BOXCAR model, which uses GSI to allocate fish sampled at Lower Granite Dam.
MAJOR_POPULATION_GROUP: Major population group within the ESU or DPS.
NMFS_POPID: NWFSC id for the population.
POPULATION_NAME: Long population name.
COMMON_POPULATION_NAME: Shorter population name used in Viability Report figures and tables.
RUN_TIMING: Run timing (fall, winter, spring, etc). If missing, see the ESU/DPS name or may not be applicable for the species.
YEAR: Integer in XXXX format. The year that the count was made. See details for ESU or DPS specific comments.
NUMBER_OF_SPAWNERS: Total spawners or escapement count. -99 means missing count. May be integer or decimal.
FRACWILD: Decimal between 0 and 1. Fraction wild or natural. -99 means missing information.
CONTRIBUTOR: Data contributor. Listed under Source below.
COMPILER: NWFSC staff who compiled the data file: Katie Barnes
CITATION: Data citation. Listed under References below.

Source

Washington Department of Fish and Wildlife

References

Salmon Population Summaries (SPS) Database: https://www.fisheries.noaa.gov/resource/tool-app/salmon-population-summaries-sps

Original source:

Samish River and Bellingham Bay Tributaries - winter Steelhead: Puget Sound Steelhead Natural Origin Spawner Abundance Dataset (1979-2018). Spawner abundance Data. Washington Department of Fish and Wildlife. Protocols and Methods available at https://fortress.wa.gov/dfw/score/score/species/steelhead.jsp?species=Steelhead. Accessed from WA SCORE on March 9, 2021 by Katie Barnas, NOAAF NWFSC.
Nooksack River - winter Steelhead: Puget Sound Steelhead Natural Origin Spawner Abundance Dataset (2004-2018). Spawner abundance Data. Washington Department of Fish and Wildlife. Protocols and Methods available at https://fortress.wa.gov/dfw/score/score/species/steelhead.jsp?species=Steelhead. Accessed from WA SCORE on March 9, 2021 by Katie Barnas, NOAAF NWFSC.
Skagit River - summer and winter Steelhead: Puget Sound Steelhead Natural Origin Spawner Abundance Dataset (1978-2019). Spawner abundance Data. Washington Department of Fish and Wildlife. Protocols and Methods available at https://fortress.wa.gov/dfw/score/score/species/steelhead.jsp?species=Steelhead. Accessed from WA SCORE on March 9, 2021 by Katie Barnas, NOAAF NWFSC.
Stillaguamish River - winter Steelhead: Puget Sound Steelhead Natural Origin Spawner Abundance Dataset (1985-2019). Spawner abundance Data. Washington Department of Fish and Wildlife. Protocols and Methods available at https://fortress.wa.gov/dfw/score/score/species/steelhead.jsp?species=Steelhead. Accessed from WA SCORE on March 9, 2021 by Katie Barnas, NOAAF NWFSC.
Snohomish/Skykomish Rivers - winter Steelhead: Puget Sound Steelhead Natural Origin Spawner Abundance Dataset (1981-2019). Spawner abundance Data. Washington Department of Fish and Wildlife. Protocols and Methods available at https://fortress.wa.gov/dfw/score/score/species/steelhead.jsp?species=Steelhead. Accessed from WA SCORE on March 9, 2021 by Katie Barnas, NOAAF NWFSC.
Pilchuck River - winter Steelhead: Puget Sound Steelhead Natural Origin Spawner Abundance Dataset (1981-2019). Spawner abundance Data. Washington Department of Fish and Wildlife. Protocols and Methods available at https://fortress.wa.gov/dfw/score/score/species/steelhead.jsp?species=Steelhead. Accessed from WA SCORE on March 9, 2021 by Katie Barnas, NOAAF NWFSC.
Tolt River - summer Steelhead: Puget Sound Steelhead Natural Origin Spawner Abundance Dataset (1985-2019). Spawner abundance Data. Washington Department of Fish and Wildlife. Protocols and Methods available at https://fortress.wa.gov/dfw/score/score/species/steelhead.jsp?species=Steelhead. Accessed from WA SCORE on March 9, 2021 by Katie Barnas, NOAAF NWFSC.
Snoqualmie River - winter Steelhead: Puget Sound Steelhead Natural Origin Spawner Abundance Dataset (1981-2019). Spawner abundance Data. Washington Department of Fish and Wildlife. Protocols and Methods available at https://fortress.wa.gov/dfw/score/score/species/steelhead.jsp?species=Steelhead. Accessed from WA SCORE on March 9, 2021 by Katie Barnas, NOAAF NWFSC.
North Lake Washington and Lake Sammamish - winter Steelhead: Puget Sound Steelhead Natural Origin Spawner Abundance Dataset (1984-1999). Spawner abundance Data. Washington Department of Fish and Wildlife. Protocols and Methods available at https://fortress.wa.gov/dfw/score/score/species/steelhead.jsp?species=Steelhead. Accessed from WA SCORE on March 9, 2021 by Katie Barnas, NOAAF NWFSC.
Cedar River - winter Steelhead: Puget Sound Steelhead Natural Origin Spawner Abundance Dataset (1984-2019). Spawner abundance Data. Washington Department of Fish and Wildlife. Protocols and Methods available at https://fortress.wa.gov/dfw/score/score/species/steelhead.jsp?species=Steelhead. Accessed from WA SCORE on March 9, 2021 by Katie Barnas, NOAAF NWFSC.
Green River - winter Steelhead: Puget Sound Steelhead Natural Origin Spawner Abundance Dataset (1978-2019). Spawner abundance Data. Washington Department of Fish and Wildlife. Protocols and Methods available at https://fortress.wa.gov/dfw/score/score/species/steelhead.jsp?species=Steelhead. Accessed from WA SCORE on March 9, 2021 by Katie Barnas, NOAAF NWFSC.
White River - winter Steelhead: Puget Sound Steelhead Natural Origin Spawner Abundance Dataset (1983-2018). Spawner abundance Data. Washington Department of Fish and Wildlife. Protocols and Methods available at https://fortress.wa.gov/dfw/score/score/species/steelhead.jsp?species=Steelhead. Accessed from WA SCORE on March 9, 2021 by Katie Barnas, NOAAF NWFSC.
Puyallup River/Carbon River - winter Steelhead: Puget Sound Steelhead Natural Origin Spawner Abundance Dataset (1992-2019). Spawner abundance Data. Washington Department of Fish and Wildlife. Protocols and Methods available at https://fortress.wa.gov/dfw/score/score/species/steelhead.jsp?species=Steelhead. Accessed from WA SCORE on March 9, 2021 by Katie Barnas, NOAAF NWFSC.
Nisqually River - winter Steelhead: Puget Sound Steelhead Natural Origin Spawner Abundance Dataset (1980-2019). Spawner abundance Data. Washington Department of Fish and Wildlife. Protocols and Methods available at https://fortress.wa.gov/dfw/score/score/species/steelhead.jsp?species=Steelhead. Accessed from WA SCORE on March 9, 2021 by Katie Barnas, NOAAF NWFSC.
South Hood Canal Tributaries - winter Steelhead: Puget Sound Steelhead Natural Origin Spawner Abundance Dataset (1998-2019). Spawner abundance Data. Washington Department of Fish and Wildlife. Protocols and Methods available at https://fortress.wa.gov/dfw/score/score/species/steelhead.jsp?species=Steelhead. Accessed from WA SCORE on March 9, 2021 by Katie Barnas, NOAAF NWFSC.
East Hood Canal Tributaries - winter Steelhead: Puget Sound Steelhead Natural Origin Spawner Abundance Dataset (1981-2019). Spawner abundance Data. Washington Department of Fish and Wildlife. Protocols and Methods available at https://fortress.wa.gov/dfw/score/score/species/steelhead.jsp?species=Steelhead. Accessed from WA SCORE on March 9, 2021 by Katie Barnas, NOAAF NWFSC.
Skokomish River - winter Steelhead: Puget Sound Steelhead Natural Origin Spawner Abundance Dataset (1982-2019). Spawner abundance Data. Washington Department of Fish and Wildlife. Protocols and Methods available at https://fortress.wa.gov/dfw/score/score/species/steelhead.jsp?species=Steelhead. Accessed from WA SCORE on March 9, 2021 by Katie Barnas, NOAAF NWFSC.
West Hood Canal Tributaries - winter Steelhead: Puget Sound Steelhead Natural Origin Spawner Abundance Dataset (1995-2018). Spawner abundance Data. Washington Department of Fish and Wildlife. Protocols and Methods available at https://fortress.wa.gov/dfw/score/score/species/steelhead.jsp?species=Steelhead. Accessed from WA SCORE on March 9, 2021 by Katie Barnas, NOAAF NWFSC.
Dungeness River - summer and winter Steelhead: Puget Sound Steelhead Natural Origin Spawner Abundance Dataset (1988-2019). Spawner abundance Data. Washington Department of Fish and Wildlife. Protocols and Methods available at https://fortress.wa.gov/dfw/score/score/species/steelhead.jsp?species=Steelhead. Accessed from WA SCORE on March 9, 2021 by Katie Barnas, NOAAF NWFSC.
Strait of Juan de Fuca Tributaries - winter Steelhead: Puget Sound Steelhead Natural Origin Spawner Abundance Dataset (1984-2018). Spawner abundance Data. Washington Department of Fish and Wildlife. Protocols and Methods available at https://fortress.wa.gov/dfw/score/score/species/steelhead.jsp?species=Steelhead. Accessed from WA SCORE on March 9, 2021 by Katie Barnas, NOAAF NWFSC.
Elhwa Steelhead: Puget Sound Steelhead Natural Origin Spawner Abundance Dataset (2013-2018). Spawner abundance Data. Washington Department of Fish and Wildlife. Protocols and Methods available at https://fortress.wa.gov/dfw/score/score/species/steelhead.jsp?species=Steelhead. Accessed from WA SCORE on March 9, 2021 by Katie Barnas, NOAAF NWFSC.

Examples

data('Steelhead-Puget-Sound-DPS-PSsteelhead2020')
library(ggplot2)
out$NUMBER_OF_SPAWNERS[out$NUMBER_OF_SPAWNERS==-99] <- NA
ggplot(out, aes(x=YEAR, y=NUMBER_OF_SPAWNERS)) + 
  geom_point(na.rm = TRUE) +
  ggtitle('Steelhead-Puget-Sound-DPS-PSsteelhead2020') +
  facet_wrap(~COMMON_POPULATION_NAME) +
  theme(axis.text.x = element_text(angle = 45, vjust = 1, hjust=1), 
   strip.text.x = element_text(size = 6))

out$FRACWILD[out$FRACWILD == -99] <- NA
ggplot(out, aes(x=YEAR, y=FRACWILD)) +
  geom_point(na.rm = TRUE) +
  ggtitle('Fraction Wild') +
  ylim(0,1) +
  facet_wrap(~COMMON_POPULATION_NAME) +
  theme(axis.text.x = element_text(angle = 45, vjust = 1, hjust=1), 
   strip.text.x = element_text(size = 6))
data('Steelhead-Puget-Sound-DPS-PSsteelhead2020')
library(ggplot2)
out$NUMBER_OF_SPAWNERS[out$NUMBER_OF_SPAWNERS==-99] <- NA
ggplot(out, aes(x=YEAR, y=NUMBER_OF_SPAWNERS)) + 
  geom_point(na.rm = TRUE) +
  ggtitle('Steelhead-Puget-Sound-DPS-PSsteelhead2020') +
  facet_wrap(~COMMON_POPULATION_NAME) +
  theme(axis.text.x = element_text(angle = 45, vjust = 1, hjust=1), 
   strip.text.x = element_text(size = 6))

out$FRACWILD[out$FRACWILD == -99] <- NA
ggplot(out, aes(x=YEAR, y=FRACWILD)) +
  geom_point(na.rm = TRUE) +
  ggtitle('Fraction Wild') +
  ylim(0,1) +
  facet_wrap(~COMMON_POPULATION_NAME) +
  theme(axis.text.x = element_text(angle = 45, vjust = 1, hjust=1), 
   strip.text.x = element_text(size = 6))

Steelhead-Snake-River-Basin-DPS-ICSRsthdGSI

Description

Spawner and fraction wild data. Species: Steelhead. Method: GSI. View raw data or Download raw data

Format

A csv file.

SERIES: For certain populations, there are multiple types of spawner count data. For example survey and model counts that are based on different methods. In this case, the 'Series' column gives a name for the dataset to distinguish it from other data sets of the same population.
ESU: ESU or DPS name.
SPECIES: Species name.
METHOD: Method for the spawner count. Survey refers to a spawning ground survey; the count itself is an expansion. See the SPS (database link in sources below) for the details for the data. LadderCount is a weir or dam count. Model refers to the DABOM model that expands from PIT tag data. GSI is an expansion based on the BOXCAR model, which uses GSI to allocate fish sampled at Lower Granite Dam.
MAJOR_POPULATION_GROUP: Major population group within the ESU or DPS.
NMFS_POPID: NWFSC id for the population.
POPULATION_NAME: Long population name.
COMMON_POPULATION_NAME: Shorter population name used in Viability Report figures and tables.
RUN_TIMING: Run timing (fall, winter, spring, etc). If missing, see the ESU/DPS name or may not be applicable for the species.
YEAR: Integer in XXXX format. The year that the count was made. See details for ESU or DPS specific comments.
NUMBER_OF_SPAWNERS: Total spawners or escapement count. -99 means missing count. May be integer or decimal.
FRACWILD: Decimal between 0 and 1. Fraction wild or natural. -99 means missing information.
CONTRIBUTOR: Data contributor. Listed under Source below.
COMPILER: NWFSC staff who compiled the data file: Mari Williams
CITATION: Data citation. Listed under References below.

Source

Idaho Department of Fish and Game

References

Salmon Population Summaries (SPS) Database: https://www.fisheries.noaa.gov/resource/tool-app/salmon-population-summaries-sps

Original source: Snake River Steelhead Natural Origin Spawner Abundance Dataset (1985-2020). Spawner abundance data. Idaho Department of Fish and Game. Protocol and Methods available at https://www.monitoringresources.org/Document/Protocol/Details/230. Accessed from www.cax.streamnet.org vers May 14, 2021 10:00PM by Mari Williams, NOAAF NWFSC/OAI..

Examples

data('Steelhead-Snake-River-Basin-DPS-ICSRsthdGSI')
library(ggplot2)
out$NUMBER_OF_SPAWNERS[out$NUMBER_OF_SPAWNERS==-99] <- NA
ggplot(out, aes(x=YEAR, y=NUMBER_OF_SPAWNERS)) + 
  geom_point(na.rm = TRUE) +
  ggtitle('Steelhead-Snake-River-Basin-DPS-ICSRsthdGSI') +
  facet_wrap(~COMMON_POPULATION_NAME) +
  theme(axis.text.x = element_text(angle = 45, vjust = 1, hjust=1))

out$FRACWILD[out$FRACWILD == -99] <- NA
ggplot(out, aes(x=YEAR, y=FRACWILD)) +
  geom_point(na.rm = TRUE) +
  ggtitle('Fraction Wild') +
  ylim(0,1) +
  facet_wrap(~COMMON_POPULATION_NAME) +
  theme(axis.text.x = element_text(angle = 45, vjust = 1, hjust=1))
data('Steelhead-Snake-River-Basin-DPS-ICSRsthdGSI')
library(ggplot2)
out$NUMBER_OF_SPAWNERS[out$NUMBER_OF_SPAWNERS==-99] <- NA
ggplot(out, aes(x=YEAR, y=NUMBER_OF_SPAWNERS)) + 
  geom_point(na.rm = TRUE) +
  ggtitle('Steelhead-Snake-River-Basin-DPS-ICSRsthdGSI') +
  facet_wrap(~COMMON_POPULATION_NAME) +
  theme(axis.text.x = element_text(angle = 45, vjust = 1, hjust=1))

out$FRACWILD[out$FRACWILD == -99] <- NA
ggplot(out, aes(x=YEAR, y=FRACWILD)) +
  geom_point(na.rm = TRUE) +
  ggtitle('Fraction Wild') +
  ylim(0,1) +
  facet_wrap(~COMMON_POPULATION_NAME) +
  theme(axis.text.x = element_text(angle = 45, vjust = 1, hjust=1))

Steelhead-Snake-River-Basin-DPS-ICSRsthdModel

Description

Spawner and fraction wild data. Species: Steelhead. Method: Model. View raw data or Download raw data

Format

A csv file.

SERIES: For certain populations, there are multiple types of spawner count data. For example survey and model counts that are based on different methods. In this case, the 'Series' column gives a name for the dataset to distinguish it from other data sets of the same population.
ESU: ESU or DPS name.
SPECIES: Species name.
METHOD: Method for the spawner count. Survey refers to a spawning ground survey; the count itself is an expansion. See the SPS (database link in sources below) for the details for the data. LadderCount is a weir or dam count. Model refers to the DABOM model that expands from PIT tag data. GSI is an expansion based on the BOXCAR model, which uses GSI to allocate fish sampled at Lower Granite Dam.
MAJOR_POPULATION_GROUP: Major population group within the ESU or DPS.
NMFS_POPID: NWFSC id for the population.
POPULATION_NAME: Long population name.
COMMON_POPULATION_NAME: Shorter population name used in Viability Report figures and tables.
RUN_TIMING: Run timing (fall, winter, spring, etc). If missing, see the ESU/DPS name or may not be applicable for the species.
YEAR: Integer in XXXX format. The year that the count was made. See details for ESU or DPS specific comments.
NUMBER_OF_SPAWNERS: Total spawners or escapement count. -99 means missing count. May be integer or decimal.
FRACWILD: Decimal between 0 and 1. Fraction wild or natural. -99 means missing information.
CONTRIBUTOR: Data contributor. Listed under Source below.
COMPILER: NWFSC staff who compiled the data file: Mari Williams
CITATION: Data citation. Listed under References below.

Source

Nez Perce Tribe

References

Salmon Population Summaries (SPS) Database: https://www.fisheries.noaa.gov/resource/tool-app/salmon-population-summaries-sps

Original source:

Tucannon River: Snake River Steelhead Natural Origin Spawner Abundance Dataset (2010-2019). Spawner abundance data. Nez Perce Tribe. Protocol and Methods available at https://www.monitoringresources.org/Document/Protocol/Details/230. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/OAI.
Asotin Creek: Snake River Steelhead Natural Origin Spawner Abundance Dataset (2010-2019). Spawner abundance data. Nez Perce Tribe. Protocol and Methods available at https://www.monitoringresources.org/Document/Protocol/Details/230. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/OAI.
Clearwater River Lower Mainstem: Snake River Steelhead Natural Origin Spawner Abundance Dataset (2010-2019). Spawner abundance data. Nez Perce Tribe. Protocol and Methods available at https://www.monitoringresources.org/Document/Protocol/Details/230. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/OAI.
Lolo Creek: Snake River Steelhead Natural Origin Spawner Abundance Dataset (2012-2019). Spawner abundance data. Nez Perce Tribe. Protocol and Methods available at https://www.monitoringresources.org/Document/Protocol/Details/230. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/OAI.
South Fork Clearwater River: Snake River Steelhead Natural Origin Spawner Abundance Dataset (2012-2019). Spawner abundance data. Nez Perce Tribe. Protocol and Methods available at https://www.monitoringresources.org/Document/Protocol/Details/230. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/OAI.
Selway River: Snake River Steelhead Natural Origin Spawner Abundance Dataset (2018-2019). Spawner abundance data. Nez Perce Tribe. Protocol and Methods available at https://www.monitoringresources.org/Document/Protocol/Details/230. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/OAI.
Lochsa River: Snake River Steelhead Natural Origin Spawner Abundance Dataset (2018-2019). Spawner abundance data. Nez Perce Tribe. Protocol and Methods available at https://www.monitoringresources.org/Document/Protocol/Details/230. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/OAI.
Grande Ronde River Lower Mainstem: Snake River Steelhead Natural Origin Spawner Abundance Dataset (2019). Spawner abundance data. Nez Perce Tribe. Protocol and Methods available at https://www.monitoringresources.org/Document/Protocol/Details/230. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/OAI.
Joseph Creek: Snake River Steelhead Natural Origin Spawner Abundance Dataset (2011-2019). Spawner abundance data. Nez Perce Tribe. Protocol and Methods available at https://www.monitoringresources.org/Document/Protocol/Details/230. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/OAI.
Wallowa River: Snake River Steelhead Natural Origin Spawner Abundance Dataset (2014-2019). Spawner abundance data. Nez Perce Tribe. Protocol and Methods available at https://www.monitoringresources.org/Document/Protocol/Details/230. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/OAI.
Grande Ronde River Upper Mainstem: Snake River Steelhead Natural Origin Spawner Abundance Dataset (2013-2019). Spawner abundance data. Nez Perce Tribe. Protocol and Methods available at https://www.monitoringresources.org/Document/Protocol/Details/230. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/OAI.
Little Salmon River: Snake River Steelhead Natural Origin Spawner Abundance Dataset (2010-2019). Spawner abundance data. Nez Perce Tribe. Protocol and Methods available at https://www.monitoringresources.org/Document/Protocol/Details/230. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/OAI.
South Fork Salmon River: Snake River Steelhead Natural Origin Spawner Abundance Dataset (2010-2019). Spawner abundance data. Nez Perce Tribe. Protocol and Methods available at https://www.monitoringresources.org/Document/Protocol/Details/230. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/OAI.
Panther Creek: Snake River Steelhead Natural Origin Spawner Abundance Dataset (2018-2019). Spawner abundance data. Nez Perce Tribe. Protocol and Methods available at https://www.monitoringresources.org/Document/Protocol/Details/230. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/OAI.
Middle Fork Salmon River Lower Mainstem: Snake River Steelhead Natural Origin Spawner Abundance Dataset (2011-2019). Spawner abundance data. Nez Perce Tribe. Protocol and Methods available at https://www.monitoringresources.org/Document/Protocol/Details/230. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/OAI.
North Fork Salmon River: Snake River Steelhead Natural Origin Spawner Abundance Dataset (2016-2019). Spawner abundance data. Nez Perce Tribe. Protocol and Methods available at https://www.monitoringresources.org/Document/Protocol/Details/230. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/OAI.
Lemhi River: Snake River Steelhead Natural Origin Spawner Abundance Dataset (2010-2019). Spawner abundance data. Nez Perce Tribe. Protocol and Methods available at https://www.monitoringresources.org/Document/Protocol/Details/230. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/OAI.
Pahsimeroi River: Snake River Steelhead Natural Origin Spawner Abundance Dataset (2011-2019). Spawner abundance data. Nez Perce Tribe. Protocol and Methods available at https://www.monitoringresources.org/Document/Protocol/Details/230. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/OAI.
East Fork Salmon River: Snake River Steelhead Natural Origin Spawner Abundance Dataset (2012-2019). Spawner abundance data. Nez Perce Tribe. Protocol and Methods available at https://www.monitoringresources.org/Document/Protocol/Details/230. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/OAI.
Imnaha River: Snake River Steelhead Natural Origin Spawner Abundance Dataset (2011-2019). Spawner abundance data. Nez Perce Tribe. Protocol and Methods available at https://www.monitoringresources.org/Document/Protocol/Details/230. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/OAI.
Secesh River: Snake River Steelhead Natural Origin Spawner Abundance Dataset (2010-2019). Spawner abundance data. Nez Perce Tribe. Protocol and Methods available at https://www.monitoringresources.org/Document/Protocol/Details/230. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/OAI.
Salmon River Upper Mainstem: Snake River Steelhead Natural Origin Spawner Abundance Dataset (2010-2019). Spawner abundance data. Nez Perce Tribe. Protocol and Methods available at https://www.monitoringresources.org/Document/Protocol/Details/230. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/OAI.

Examples

data('Steelhead-Snake-River-Basin-DPS-ICSRsthdModel')
library(ggplot2)
out$NUMBER_OF_SPAWNERS[out$NUMBER_OF_SPAWNERS==-99] <- NA
ggplot(out, aes(x=YEAR, y=NUMBER_OF_SPAWNERS)) + 
  geom_point(na.rm = TRUE) +
  ggtitle('Steelhead-Snake-River-Basin-DPS-ICSRsthdModel') +
  facet_wrap(~COMMON_POPULATION_NAME) +
  theme(axis.text.x = element_text(angle = 45, vjust = 1, hjust=1), 
   strip.text.x = element_text(size = 6))

out$FRACWILD[out$FRACWILD == -99] <- NA
ggplot(out, aes(x=YEAR, y=FRACWILD)) +
  geom_point(na.rm = TRUE) +
  ggtitle('Fraction Wild') +
  ylim(0,1) +
  facet_wrap(~COMMON_POPULATION_NAME) +
  theme(axis.text.x = element_text(angle = 45, vjust = 1, hjust=1), 
   strip.text.x = element_text(size = 6))
data('Steelhead-Snake-River-Basin-DPS-ICSRsthdModel')
library(ggplot2)
out$NUMBER_OF_SPAWNERS[out$NUMBER_OF_SPAWNERS==-99] <- NA
ggplot(out, aes(x=YEAR, y=NUMBER_OF_SPAWNERS)) + 
  geom_point(na.rm = TRUE) +
  ggtitle('Steelhead-Snake-River-Basin-DPS-ICSRsthdModel') +
  facet_wrap(~COMMON_POPULATION_NAME) +
  theme(axis.text.x = element_text(angle = 45, vjust = 1, hjust=1), 
   strip.text.x = element_text(size = 6))

out$FRACWILD[out$FRACWILD == -99] <- NA
ggplot(out, aes(x=YEAR, y=FRACWILD)) +
  geom_point(na.rm = TRUE) +
  ggtitle('Fraction Wild') +
  ylim(0,1) +
  facet_wrap(~COMMON_POPULATION_NAME) +
  theme(axis.text.x = element_text(angle = 45, vjust = 1, hjust=1), 
   strip.text.x = element_text(size = 6))

Steelhead-Snake-River-Basin-DPS-ICSRsthdSurvey

Description

Spawner and fraction wild data. Species: Steelhead. Method: Survey. View raw data or Download raw data

Format

A csv file.

SERIES: For certain populations, there are multiple types of spawner count data. For example survey and model counts that are based on different methods. In this case, the 'Series' column gives a name for the dataset to distinguish it from other data sets of the same population.
ESU: ESU or DPS name.
SPECIES: Species name.
METHOD: Method for the spawner count. Survey refers to a spawning ground survey; the count itself is an expansion. See the SPS (database link in sources below) for the details for the data. LadderCount is a weir or dam count. Model refers to the DABOM model that expands from PIT tag data. GSI is an expansion based on the BOXCAR model, which uses GSI to allocate fish sampled at Lower Granite Dam.
MAJOR_POPULATION_GROUP: Major population group within the ESU or DPS.
NMFS_POPID: NWFSC id for the population.
POPULATION_NAME: Long population name.
COMMON_POPULATION_NAME: Shorter population name used in Viability Report figures and tables.
RUN_TIMING: Run timing (fall, winter, spring, etc). If missing, see the ESU/DPS name or may not be applicable for the species.
YEAR: Integer in XXXX format. The year that the count was made. See details for ESU or DPS specific comments.
NUMBER_OF_SPAWNERS: Total spawners or escapement count. -99 means missing count. May be integer or decimal.
FRACWILD: Decimal between 0 and 1. Fraction wild or natural. -99 means missing information.
CONTRIBUTOR: Data contributor. Listed under Source below.
COMPILER: NWFSC staff who compiled the data file: Mari Williams
CITATION: Data citation. Listed under References below.

Source

Asotin Creek: Washington Department of Fish and Wildlife
Joseph Creek: Oregon Department of Fish and Wildlife
Grande Ronde River Upper Mainstem: Oregon Department of Fish and Wildlife

References

Salmon Population Summaries (SPS) Database: https://www.fisheries.noaa.gov/resource/tool-app/salmon-population-summaries-sps

Original source:

Asotin Creek: Snake River Steelhead Natural Origin Spawner Abundance Dataset (1986-2018). Spawner abundance data. Washington Department of Fish and Wildlife. Protocol and Methods available at https://fortress.wa.gov/dfw/score/score/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/OAI.
Joseph Creek: Snake River Steelhead Natural Origin Spawner Abundance Dataset (1970-2017). Spawner abundance data. Oregon Department of Fish and Wildlife. Protocol and Methods available at http://odfwrecoverytracker.org/metadata/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/OAI.
Grande Ronde River Upper Mainstem: Snake River Steelhead Natural Origin Spawner Abundance Dataset (1967-2018). Spawner abundance data. Oregon Department of Fish and Wildlife. Protocol and Methods available at http://odfwrecoverytracker.org/metadata/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/OAI.

Examples

data('Steelhead-Snake-River-Basin-DPS-ICSRsthdSurvey')
library(ggplot2)
out$NUMBER_OF_SPAWNERS[out$NUMBER_OF_SPAWNERS==-99] <- NA
ggplot(out, aes(x=YEAR, y=NUMBER_OF_SPAWNERS)) + 
  geom_point(na.rm = TRUE) +
  ggtitle('Steelhead-Snake-River-Basin-DPS-ICSRsthdSurvey') +
  facet_wrap(~COMMON_POPULATION_NAME) +
  theme(axis.text.x = element_text(angle = 45, vjust = 1, hjust=1))

out$FRACWILD[out$FRACWILD == -99] <- NA
ggplot(out, aes(x=YEAR, y=FRACWILD)) +
  geom_point(na.rm = TRUE) +
  ggtitle('Fraction Wild') +
  ylim(0,1) +
  facet_wrap(~COMMON_POPULATION_NAME) +
  theme(axis.text.x = element_text(angle = 45, vjust = 1, hjust=1))
data('Steelhead-Snake-River-Basin-DPS-ICSRsthdSurvey')
library(ggplot2)
out$NUMBER_OF_SPAWNERS[out$NUMBER_OF_SPAWNERS==-99] <- NA
ggplot(out, aes(x=YEAR, y=NUMBER_OF_SPAWNERS)) + 
  geom_point(na.rm = TRUE) +
  ggtitle('Steelhead-Snake-River-Basin-DPS-ICSRsthdSurvey') +
  facet_wrap(~COMMON_POPULATION_NAME) +
  theme(axis.text.x = element_text(angle = 45, vjust = 1, hjust=1))

out$FRACWILD[out$FRACWILD == -99] <- NA
ggplot(out, aes(x=YEAR, y=FRACWILD)) +
  geom_point(na.rm = TRUE) +
  ggtitle('Fraction Wild') +
  ylim(0,1) +
  facet_wrap(~COMMON_POPULATION_NAME) +
  theme(axis.text.x = element_text(angle = 45, vjust = 1, hjust=1))

Steelhead-Upper-Columbia-River-DPS-ICUCsthdModel

Description

Spawner and fraction wild data. Species: Steelhead. Method: Model. View raw data or Download raw data

Format

A csv file.

SERIES: For certain populations, there are multiple types of spawner count data. For example survey and model counts that are based on different methods. In this case, the 'Series' column gives a name for the dataset to distinguish it from other data sets of the same population.
ESU: ESU or DPS name.
SPECIES: Species name.
METHOD: Method for the spawner count. Survey refers to a spawning ground survey; the count itself is an expansion. See the SPS (database link in sources below) for the details for the data. LadderCount is a weir or dam count. Model refers to the DABOM model that expands from PIT tag data. GSI is an expansion based on the BOXCAR model, which uses GSI to allocate fish sampled at Lower Granite Dam.
MAJOR_POPULATION_GROUP: Major population group within the ESU or DPS.
NMFS_POPID: NWFSC id for the population.
POPULATION_NAME: Long population name.
COMMON_POPULATION_NAME: Shorter population name used in Viability Report figures and tables.
RUN_TIMING: Run timing (fall, winter, spring, etc). If missing, see the ESU/DPS name or may not be applicable for the species.
YEAR: Integer in XXXX format. The year that the count was made. See details for ESU or DPS specific comments.
NUMBER_OF_SPAWNERS: Total spawners or escapement count. -99 means missing count. May be integer or decimal.
FRACWILD: Decimal between 0 and 1. Fraction wild or natural. -99 means missing information.
CONTRIBUTOR: Data contributor. Listed under Source below.
COMPILER: NWFSC staff who compiled the data file: Mari Williams
CITATION: Data citation. Listed under References below.

Source

Washington Department of Fish and Wildlife

References

Salmon Population Summaries (SPS) Database: https://www.fisheries.noaa.gov/resource/tool-app/salmon-population-summaries-sps

Original source: Waterhouse, L., J. White, K. See, A. Murdoch, and B. X. Semmens. 2020. A Bayesian nested patch occupancy model to estimate steelhead movement and abundance. Ecological Applications 00(00): e02202. 10.1002/eap.2202.

Examples

data('Steelhead-Upper-Columbia-River-DPS-ICUCsthdModel')
library(ggplot2)
out$NUMBER_OF_SPAWNERS[out$NUMBER_OF_SPAWNERS==-99] <- NA
ggplot(out, aes(x=YEAR, y=NUMBER_OF_SPAWNERS)) + 
  geom_point(na.rm = TRUE) +
  ggtitle('Steelhead-Upper-Columbia-River-DPS-ICUCsthdModel') +
  facet_wrap(~COMMON_POPULATION_NAME) +
  theme(axis.text.x = element_text(angle = 45, vjust = 1, hjust=1))

out$FRACWILD[out$FRACWILD == -99] <- NA
ggplot(out, aes(x=YEAR, y=FRACWILD)) +
  geom_point(na.rm = TRUE) +
  ggtitle('Fraction Wild') +
  ylim(0,1) +
  facet_wrap(~COMMON_POPULATION_NAME) +
  theme(axis.text.x = element_text(angle = 45, vjust = 1, hjust=1))
data('Steelhead-Upper-Columbia-River-DPS-ICUCsthdModel')
library(ggplot2)
out$NUMBER_OF_SPAWNERS[out$NUMBER_OF_SPAWNERS==-99] <- NA
ggplot(out, aes(x=YEAR, y=NUMBER_OF_SPAWNERS)) + 
  geom_point(na.rm = TRUE) +
  ggtitle('Steelhead-Upper-Columbia-River-DPS-ICUCsthdModel') +
  facet_wrap(~COMMON_POPULATION_NAME) +
  theme(axis.text.x = element_text(angle = 45, vjust = 1, hjust=1))

out$FRACWILD[out$FRACWILD == -99] <- NA
ggplot(out, aes(x=YEAR, y=FRACWILD)) +
  geom_point(na.rm = TRUE) +
  ggtitle('Fraction Wild') +
  ylim(0,1) +
  facet_wrap(~COMMON_POPULATION_NAME) +
  theme(axis.text.x = element_text(angle = 45, vjust = 1, hjust=1))

Steelhead-Upper-Columbia-River-DPS-ICUCsthdSurvey2020

Description

Spawner and fraction wild data. Species: Steelhead. Method: Survey. View raw data or Download raw data

Format

A csv file.

SERIES: For certain populations, there are multiple types of spawner count data. For example survey and model counts that are based on different methods. In this case, the 'Series' column gives a name for the dataset to distinguish it from other data sets of the same population.
ESU: ESU or DPS name.
SPECIES: Species name.
METHOD: Method for the spawner count. Survey refers to a spawning ground survey; the count itself is an expansion. See the SPS (database link in sources below) for the details for the data. LadderCount is a weir or dam count. Model refers to the DABOM model that expands from PIT tag data. GSI is an expansion based on the BOXCAR model, which uses GSI to allocate fish sampled at Lower Granite Dam.
MAJOR_POPULATION_GROUP: Major population group within the ESU or DPS.
NMFS_POPID: NWFSC id for the population.
POPULATION_NAME: Long population name.
COMMON_POPULATION_NAME: Shorter population name used in Viability Report figures and tables.
RUN_TIMING: Run timing (fall, winter, spring, etc). If missing, see the ESU/DPS name or may not be applicable for the species.
YEAR: Integer in XXXX format. The year that the count was made. See details for ESU or DPS specific comments.
NUMBER_OF_SPAWNERS: Total spawners or escapement count. -99 means missing count. May be integer or decimal.
FRACWILD: Decimal between 0 and 1. Fraction wild or natural. -99 means missing information.
CONTRIBUTOR: Data contributor. Listed under Source below.
COMPILER: NWFSC staff who compiled the data file: Mari Williams
CITATION: Data citation. Listed under References below.

Source

Washington Department of Fish and Wildlife

References

Salmon Population Summaries (SPS) Database: https://www.fisheries.noaa.gov/resource/tool-app/salmon-population-summaries-sps

Original source:

Wenatchee River: Upper Columbia River Steelhead Natural Origin Spawner Abundance Dataset (1962-2018). Spawner abundance data. Washington Department of Fish and Wildlife. Protocol and Methods available at https://fortress.wa.gov/dfw/score/score/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/OAI.
Entiat River: Upper Columbia River Steelhead Natural Origin Spawner Abundance Dataset (1987-2018). Spawner abundance data. Washington Department of Fish and Wildlife. Protocol and Methods available at https://fortress.wa.gov/dfw/score/score/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/OAI.
Methow River: Upper Columbia River Steelhead Natural Origin Spawner Abundance Dataset (1988-2019). Spawner abundance data. Washington Department of Fish and Wildlife. Protocol and Methods available at https://fortress.wa.gov/dfw/score/score/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/OAI.
Okanogan River: Upper Columbia River Steelhead Natural Origin Spawner Abundance Dataset (1988-2018). Spawner abundance data. Washington Department of Fish and Wildlife. Protocol and Methods available at https://fortress.wa.gov/dfw/score/score/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/OAI.

Examples

data('Steelhead-Upper-Columbia-River-DPS-ICUCsthdSurvey2020')
library(ggplot2)
out$NUMBER_OF_SPAWNERS[out$NUMBER_OF_SPAWNERS==-99] <- NA
ggplot(out, aes(x=YEAR, y=NUMBER_OF_SPAWNERS)) + 
  geom_point(na.rm = TRUE) +
  ggtitle('Steelhead-Upper-Columbia-River-DPS-ICUCsthdSurvey2020') +
  facet_wrap(~COMMON_POPULATION_NAME) +
  theme(axis.text.x = element_text(angle = 45, vjust = 1, hjust=1))

out$FRACWILD[out$FRACWILD == -99] <- NA
ggplot(out, aes(x=YEAR, y=FRACWILD)) +
  geom_point(na.rm = TRUE) +
  ggtitle('Fraction Wild') +
  ylim(0,1) +
  facet_wrap(~COMMON_POPULATION_NAME) +
  theme(axis.text.x = element_text(angle = 45, vjust = 1, hjust=1))
data('Steelhead-Upper-Columbia-River-DPS-ICUCsthdSurvey2020')
library(ggplot2)
out$NUMBER_OF_SPAWNERS[out$NUMBER_OF_SPAWNERS==-99] <- NA
ggplot(out, aes(x=YEAR, y=NUMBER_OF_SPAWNERS)) + 
  geom_point(na.rm = TRUE) +
  ggtitle('Steelhead-Upper-Columbia-River-DPS-ICUCsthdSurvey2020') +
  facet_wrap(~COMMON_POPULATION_NAME) +
  theme(axis.text.x = element_text(angle = 45, vjust = 1, hjust=1))

out$FRACWILD[out$FRACWILD == -99] <- NA
ggplot(out, aes(x=YEAR, y=FRACWILD)) +
  geom_point(na.rm = TRUE) +
  ggtitle('Fraction Wild') +
  ylim(0,1) +
  facet_wrap(~COMMON_POPULATION_NAME) +
  theme(axis.text.x = element_text(angle = 45, vjust = 1, hjust=1))

Steelhead-Upper-Willamette-River-DPS-UWsthd2020

Description

Spawner and fraction wild data. Species: steelhead. Method: LadderCount. View raw data or Download raw data

Format

A csv file.

SERIES: For certain populations, there are multiple types of spawner count data. For example survey and model counts that are based on different methods. In this case, the 'Series' column gives a name for the dataset to distinguish it from other data sets of the same population.
ESU: ESU or DPS name.
SPECIES: Species name.
METHOD: Method for the spawner count. Survey refers to a spawning ground survey; the count itself is an expansion. See the SPS (database link in sources below) for the details for the data. LadderCount is a weir or dam count. Model refers to the DABOM model that expands from PIT tag data. GSI is an expansion based on the BOXCAR model, which uses GSI to allocate fish sampled at Lower Granite Dam.
MAJOR_POPULATION_GROUP: Major population group within the ESU or DPS.
NMFS_POPID: NWFSC id for the population.
POPULATION_NAME: Long population name.
COMMON_POPULATION_NAME: Shorter population name used in Viability Report figures and tables.
RUN_TIMING: Run timing (fall, winter, spring, etc). If missing, see the ESU/DPS name or may not be applicable for the species.
YEAR: Integer in XXXX format. The year that the count was made. See details for ESU or DPS specific comments.
NUMBER_OF_SPAWNERS: Total spawners or escapement count. -99 means missing count. May be integer or decimal.
FRACWILD: Decimal between 0 and 1. Fraction wild or natural. -99 means missing information.
CONTRIBUTOR: Data contributor. Listed under Source below.
COMPILER: NWFSC staff who compiled the data file: Mari Williams
CITATION: Data citation. Listed under References below.

Source

Oregon Department of Fish and Wildlife

References

Salmon Population Summaries (SPS) Database: https://www.fisheries.noaa.gov/resource/tool-app/salmon-population-summaries-sps

Original source: Upper Willamette River Steelhead Natural Origin Spawner Escapement (1971-2019). Ladder count. Personal communication from Jamie Anthony, ODFW, via Mari Williams, NOAAF NWFSC/PSMFC..

Examples

data('Steelhead-Upper-Willamette-River-DPS-UWsthd2020')
library(ggplot2)
out$NUMBER_OF_SPAWNERS[out$NUMBER_OF_SPAWNERS==-99] <- NA
ggplot(out, aes(x=YEAR, y=NUMBER_OF_SPAWNERS)) + 
  geom_point(na.rm = TRUE) +
  ggtitle('Steelhead-Upper-Willamette-River-DPS-UWsthd2020') +
  facet_wrap(~COMMON_POPULATION_NAME) +
  theme(axis.text.x = element_text(angle = 45, vjust = 1, hjust=1))

out$FRACWILD[out$FRACWILD == -99] <- NA
ggplot(out, aes(x=YEAR, y=FRACWILD)) +
  geom_point(na.rm = TRUE) +
  ggtitle('Fraction Wild') +
  ylim(0,1) +
  facet_wrap(~COMMON_POPULATION_NAME) +
  theme(axis.text.x = element_text(angle = 45, vjust = 1, hjust=1))
data('Steelhead-Upper-Willamette-River-DPS-UWsthd2020')
library(ggplot2)
out$NUMBER_OF_SPAWNERS[out$NUMBER_OF_SPAWNERS==-99] <- NA
ggplot(out, aes(x=YEAR, y=NUMBER_OF_SPAWNERS)) + 
  geom_point(na.rm = TRUE) +
  ggtitle('Steelhead-Upper-Willamette-River-DPS-UWsthd2020') +
  facet_wrap(~COMMON_POPULATION_NAME) +
  theme(axis.text.x = element_text(angle = 45, vjust = 1, hjust=1))

out$FRACWILD[out$FRACWILD == -99] <- NA
ggplot(out, aes(x=YEAR, y=FRACWILD)) +
  geom_point(na.rm = TRUE) +
  ggtitle('Fraction Wild') +
  ylim(0,1) +
  facet_wrap(~COMMON_POPULATION_NAME) +
  theme(axis.text.x = element_text(angle = 45, vjust = 1, hjust=1))

Package 'VRData'

Help Index

Hood-Canal-HCchum2020

Description

Format

Source

References

Examples

Ozette-Lake-Sockeye-Salmon-ESU-OzetteSockeye2020

Description

Format

Source

References

Examples

Puget-Sound-PSchinook2020

Description

Format

Source

References

Examples

Salmon-Chinook-Lower-Columbia-River-ESU-LCchinook2020

Description

Format

Source

References

Examples

Salmon-Chinook-Snake-River-fall-run-ESU-ICSRFchinook2021

Description

Format

Source

References

Examples

Salmon-Chinook-Snake-River-spring-summer-run-ESU-ICSRSSchinookModel

Description

Format

Source

References

Examples

Salmon-Chinook-Snake-River-spring-summer-run-ESU-ICSRSSchinookSurvey2020

Description

Format

Source

References

Examples

Salmon-Chinook-Snake-River-spring-summer-run-ESU-ICSRSSchinookSurveySBT2020

Description

Format

Source

References

Examples

Salmon-Chinook-Upper-Columbia-River-spring-run-ESU-ICUCchinook2020

Description

Format

Source

References

Examples

Salmon-Chinook-Upper-Willamette-River-ESU-UWchinook2020

Description

Format

Source

References

Examples

Salmon-chum-Columbia-River-ESU-CRchum2020

Description

Format

Source

References

Examples

Salmon-coho-Lower-Columbia-River-ESU-LCcoho2020

Description

Format

Source

References

Examples

Salmon-coho-Oregon-Coast-ESU-OCcoho2020

Description

Format

Source

References

Examples